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Sodium in PDB 4rhb: Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane

Protein crystallography data

The structure of Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane, PDB code: 4rhb was solved by G.Malojcic, R.A.Garner, D.Kahne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 108.31 / 3.35
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 128.040, 136.620, 108.310, 90.00, 90.00, 90.00
R / Rfree (%) 25.7 / 33.8

Other elements in 4rhb:

The structure of Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane (pdb code 4rhb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane, PDB code: 4rhb:

Sodium binding site 1 out of 1 in 4rhb

Go back to Sodium Binding Sites List in 4rhb
Sodium binding site 1 out of 1 in the Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Lipopolysaccharide Assembly Complex Lptd-Lpte From the Escherichia Coli Outer Membrane within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:65.1
occ:1.00
O B:LYS84 3.3 77.2 1.0
C B:LYS84 4.4 81.8 1.0
CB B:LYS84 4.6 90.3 1.0
N B:LYS84 4.8 80.8 1.0
O A:HOH901 4.9 65.8 1.0
CA B:LYS84 4.9 81.6 1.0

Reference:

G.Malojcic, R.A.Garner, D.Kahne. Structural Basis of Lipopolysaccharide Insertion Into the Bacterial Outer Membrane To Be Published.
Page generated: Sun Aug 17 21:37:43 2025

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