Sodium in PDB 4w2p: Anti-Marburgvirus Nucleoprotein Single Domain Antibody C

The structure of Anti-Marburgvirus Nucleoprotein Single Domain Antibody C, PDB code: 4w2p was solved by A.B.Taylor, J.A.Garza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.77 / 1.77
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	33.392, 49.506, 65.406, 87.74, 84.77, 79.41
R / Rfree (%)	16.5 / 20.3

The binding sites of Sodium atom in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody C (pdb code 4w2p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody C, PDB code: 4w2p:

Sodium binding site 1 out of 1 in the Anti-Marburgvirus Nucleoprotein Single Domain Antibody C


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anti-Marburgvirus Nucleoprotein Single Domain Antibody C within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:9.1 occ:1.00 O A:HOH325 3.1 14.7 1.0 N A:GLN13 3.3 10.2 1.0 OE1 A:GLN13 3.4 23.3 1.0 CG A:GLN13 3.6 9.6 1.0 CA A:VAL12 3.8 9.9 1.0 CG2 A:VAL12 3.8 11.9 1.0 CD A:GLN13 3.9 19.6 1.0 CE1 A:HIS127 4.0 15.8 1.0 C A:VAL12 4.0 10.6 1.0 CB A:GLN13 4.0 11.0 1.0 CA A:GLN13 4.3 10.1 1.0 CB A:ALA121 4.3 13.3 1.0 CB A:VAL12 4.3 7.9 1.0 CD2 A:HIS125 4.4 12.5 1.0 NE2 A:HIS127 4.7 16.3 1.0 O A:LEU11 4.7 10.7 1.0 NE2 A:HIS125 4.8 11.5 1.0 N A:VAL12 4.9 10.8 1.0

J.A.Garza, A.B.Taylor, L.J.Sherwood, P.J.Hart, A.Hayhurst. Unveiling A Drift Resistant Cryptotope Withinmarburgvirusnucleoprotein Recognized By Llama Single-Domain Antibodies. Front Immunol V. 8 1234 2017.
ISSN: ESSN 1664-3224
PubMed: 29038656
DOI: 10.3389/FIMMU.2017.01234