Sodium in PDB, part 303 (files: 12081-12120),
PDB 9fe5-9icl
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12081-12120 (PDB 9fe5-9icl).
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9fe5 (Na: 6) - Crystal Structure of Nuoef Variant R66G(Nuof) From Aquifex Aeolicus Bound to Nadh Under Anoxic Conditions After 10 Min Soaking
Other atoms:
Fe (12);
Cl (2);
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9fe7 (Na: 11) - Crystal Structure of Oxidized Nuoef Variant P228R(Nuof) From Aquifex Aeolicus
Other atoms:
Fe (12);
Cl (3);
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9fe8 (Na: 8) - Crystal Structure of Reduced Nuoef Variant P228R(Nuof) From Aquifex Aeolicus
Other atoms:
Fe (12);
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9fea (Na: 14) - Crystal Structure of Reduced Nuoef Variant P228R(Nuof) From Aquifex Aeolicus Bound to Nad+
Other atoms:
Fe (12);
Cl (2);
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9fi9 (Na: 1) - Human Pif + Z48847594 (Occupancy 0.7)
Other atoms:
Mg (1);
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9fif (Na: 7) - Crystal Structure of Nuoef Variant P228R(Nuof) From Aquifex Aeolicus Bound to Nadh Under Anoxic Conditions
Other atoms:
Fe (12);
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9fih (Na: 10) - Crystal Structure of Nuoef Variant P228R(Nuof) From Aquifex Aeolicus Bound to Nadh Under Anoxic Conditions After 10 Min Soaking
Other atoms:
Fe (12);
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9fii (Na: 9) - Crystal Structure of Oxidized Nuoef Variant E222K(Nuof) From Aquifex Aeolicus
Other atoms:
Cl (5);
Fe (12);
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9fij (Na: 15) - Crystal Structure of Reduced Nuoef Variant E222K(Nuof) From Aquifex Aeolicus
Other atoms:
Fe (12);
Cl (7);
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9fil (Na: 10) - Crystal Structure of Reduced Nuoef Variant E222K(Nuof) From Aquifex Aeolicus Bound to Nad+
Other atoms:
Fe (12);
Cl (3);
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9fjx (Na: 1) - Crystal Structure of Human Crbn-DDB1 in Complex with Lenalidomide
Other atoms:
Zn (1);
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9fs3 (Na: 1) - Mutant S1538L of the Dihydroorotase Domain of Human Cad Protein Bound to Carbamoyl Aspartate
Other atoms:
Zn (4);
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9fud (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - Without Ligand Glcnac (Apo)
Other atoms:
Cl (4);
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9fue (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac
Other atoms:
Cl (4);
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9fup (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Small Foils): A2A Adenosine Receptor Co-Crystallised with Istradefylline
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9fw2 (Na: 1) - Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14
Other atoms:
Zn (4);
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9fym (Na: 2) - Lacto-N-Biosidase From Treponema Denticola Atcc 35405
Other atoms:
Zn (2);
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9fz3 (Na: 3) - Crystal Structure of K38 Amylase From Bacillus Sp. Strain Ksm-K38 Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe
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9g34 (Na: 2) - The Hiv Protease Inhibitor Darunavir Binding to the Active Site of Cryphonectria Parasitica Endothiapepsin
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9gbf (Na: 2) - X-Ray Structure of PHDVC5HCH Tandem Domain of NSD2
Other atoms:
Zn (8);
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9gcv (Na: 1) - Identification of Chloride Ions in Lysozyme at Long Wavelengths
Other atoms:
Cl (5);
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9gf3 (Na: 4) - This Peptide Is A Variant of the De Novo Coiled-Coil Heptameric Peptic, Cc-Hept, Which Consists of 4 Heptad Repeats. This Peptide Is Denoted As Cc-Hept-HEN2 As Its Second Heptad Repeat Has Been Replaced with A Hendecad Repeat.
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9gf4 (Na: 2) - This Peptide Is A Variant of the Previously Designed De Novo Heptameric Coiled-Coil, Cc-Hept-IV, Which Consists of 4 Heptad Repeats. We Have Denoted This De Novo Peptide Cc-Hept-IV-HEN2 As It Includes A Noncanonical, Hendecad Repeat Which Replaces the Second Heptad Repeat in the Original Cc-Hept-IV Sequence.
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9ggi (Na: 1) - Crystal Structure of Argininosuccinate Lyase From Arabidopsis Thaliana (Atasl)
Other atoms:
Cl (6);
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9ghx (Na: 1) - Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.
Other atoms:
Re (5);
Cl (4);
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9gky (Na: 2) - Crystal Structure of Histone Deacetylase (Hdah) From Vibrio Cholerae in Complex with Decanoic Acid
Other atoms:
Zn (2);
K (9);
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9grq (Na: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Theophylline
Other atoms:
Zn (2);
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9gyb (Na: 1) - Crystal Structure of the Recombinant Codh From Rhodopspirillum Rubrum Produced in Escherichia Coli
Other atoms:
Ni (6);
Fe (60);
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9h3e (Na: 1) - Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip
Other atoms:
Cl (3);
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9hae (Na: 3) - Dust Mite Allergen Der F 7 with Computationally Designed DERF7_B2 Binder
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9icb (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and COCL2
Other atoms:
Co (2);
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9icc (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and CRCL3
Other atoms:
Cr (1);
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9ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CUCL2 (0.1 Millimolar)
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9icf (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
Other atoms:
Zn (2);
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9icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
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9ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
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9ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (2);
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9icj (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna
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9ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Artificial Mother Liquor
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9icl (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Pyrophosphate and MNCL2
Other atoms:
Mn (2);
Page generated: Tue Feb 25 11:43:55 2025
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