Sodium in PDB, part 303 (files: 12081-12120),
PDB 9c42-9dpo
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12081-12120 (PDB 9c42-9dpo).
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9c42 (Na: 3) - Structure of Human MR1-Ellagic Acid in Complex with Human Mait A-F7 Tcr
Other atoms:
Cl (1);
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9c46 (Na: 1) - Right-Left Hybrid Parallel G-Quadruplex From SLC2A1 Promoter
Other atoms:
K (4);
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9c50 (Na: 2) - Replacement of A Single Residue Changes the Primary Specificity of Thrombin
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9c6e (Na: 1) - High-Resolution Structure of Bovine (3-367)Arrestin-1 in A Pre- Activated Conformation
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9c6k (Na: 2) - Cryo-Em Structure of the Tpp Riboswitch Embedded in An Rna Scaffold Bound to Thiamine Pyrophosphate
Other atoms:
Mg (6);
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9c6l (Na: 5) - Yasminevirus C12ORF29, A 5' to 3' Rna Ligase
Other atoms:
Mg (6);
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9c74 (Na: 3) - Superfolder Green Fluorescent Protein with Meta-Nitro-Tyrosine Incorporated at Position 66
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9c7a (Na: 2) - Crystal Structure of R149W Neurodevelopmental Disease-Associated U2AF2 Variant
Other atoms:
Br (1);
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9cdz (Na: 2) - Crystal Structure of MDM2-Peptide Complex
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9cgs (Na: 1) - Structure of Human Mait A-F7 Tcr in Complex with Human MR1-Pyridoxal- 5'-Phosphate
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9ci7 (Na: 1) - Structure of Pnuts:TOX4 Complex
Other atoms:
Zn (2);
Cl (4);
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9cip (Na: 7) - Microed Structure of the C11 Cysteine Protease Clostripain
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9ck2 (Na: 1) - Human Pu.1 Minimal Ets Domain (165-258) Bound to D(Aataagcggaagtggg)
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9cld (Na: 6) - Crystal Structure of Maltose Binding Protein (Apo)
Other atoms:
Cd (4);
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9cp6 (Na: 1) - Crystal Structure of the Dna Binding Domain of FLI1 (Residues 259-371)
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9cr5 (Na: 5) - Crystal Structure of Gnat Superfamily Acetyltransferase PA2271 From Pseudomonas Aeruginosa
Other atoms:
Cl (2);
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9crn (Na: 1) - Crystal Structure of Streptococcus Pyogenes Tgla
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9cum (Na: 1) - Q67H Mutant of R67 Dhfr Complexed with Congo Red
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9cya (Na: 2) - C387S Variant of D-Ornithine/D-Lysine Decarboxylase Complexed with Hepes and Putrescine
Other atoms:
Cl (2);
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9d02 (Na: 2) - Co-Crystal Structure of Circularly Permuted Human Taspase-1 Bound to Ligand SMDC1014883 (2R)-4-(Ethenesulfonyl)-1-{[3-Fluoro-4- (Trifluoromethoxy)Phenyl]Methyl}-2-[(Prop-2-Yn-1-Yloxy) Methyl]Piperazine
Other atoms:
Cl (2);
F (8);
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9d03 (Na: 2) - Co-Crystal Structure of Circularly Permuted Human Taspase-1 Bound to Ligand SMDC1014689 1-(Ethenesulfonyl)-4-{[3-Fluoro-4- (Trifluoromethoxy)Phenyl]Methyl}Piperazine
Other atoms:
F (8);
Cl (3);
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9d04 (Na: 2) - Co-Crystal Structure of Circularly Permuted Human Taspase-1 Bound to Ligand SMDC994967 1-(Ethenesulfonyl)-4-{[4- (Trifluoromethoxy) Phenyl]Methyl}Piperazine
Other atoms:
Cl (3);
F (6);
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9d66 (Na: 9) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Aspartate in An Intermediate Outward Facing State
Other atoms:
Hg (3);
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9d67 (Na: 9) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound D- Aspartate in An Intermediate Outward Facing State
Other atoms:
Hg (3);
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9d68 (Na: 2) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Outward Facing State
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9d69 (Na: 3) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Intermediate Outward Facing State (Slight Upper Position)
Other atoms:
Hg (1);
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9d6a (Na: 3) - Human Excitatory Amino Acid Transporter 3 (EAAT3) with Bound L- Cysteine in An Intermediate Outward Facing State
Other atoms:
Hg (1);
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9dam (Na: 1) - A Darpin Fused to the 1TEL Crystallization Chaperone Via A Direct Helical Fusion
Other atoms:
Cl (3);
Mg (2);
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9db5 (Na: 8) - A Darpin Fused to the 1TEL Crystallization Chaperone Via A Proline- Alanine Linker
Other atoms:
Cl (1);
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9dk1 (Na: 1) - Lexapeptide Dehydratase Complex Lxmky Apo
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9dk3 (Na: 1) - Lexapeptide Dehydratase Complex Lxmky, Hydrolysed Atp Bound
Other atoms:
Mg (2);
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9dk4 (Na: 7) - Ancestral Hydroxynitrile Lyase with Fifteen Substitutions
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9doc (Na: 5) - The Von Willebrand Factor A Domain of Human Capillary Morphogenesis Gene II, Flexibly Fused to the 1TEL Crystallization Chaperone, Thr- Val Linker Variant, at 1.2 Angstrom Resolution
Other atoms:
Mg (7);
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9dow (Na: 1) - H-Lysrs Bound to Unmodified Trna-LYS3 (Undocked State, Amp Bound)
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9doz (Na: 1) - Myocilin Olf Oligomers
Other atoms:
Ca (1);
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9dpa (Na: 1) - Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound)
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9dpb (Na: 1) - Human Lysrs Bound to Unmodified Trna-LYS3 (Undocked State, Ampcpp Bound)
Other atoms:
Mg (4);
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9dpm (Na: 3) - Bmp-9 Monomer Growth Factor with Cysteinylation
Other atoms:
Cl (3);
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9dpn (Na: 4) - Bmp-9 Wild-Type Dimer Without Radiation Damage in Neutral pH
Other atoms:
Cl (5);
-
9dpo (Na: 4) - Bmp-9 Wild-Type Dimer with Radiation Damage in Neutral pH
Other atoms:
Cl (5);
Page generated: Sat Aug 23 06:32:53 2025
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