Sodium in PDB 9dpa: Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound)

All present enzymatic activity of Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound):
6.1.1.6;

The binding sites of Sodium atom in the Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound) (pdb code 9dpa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound), PDB code: 9dpa:

Sodium binding site 1 out of 1 in the Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Lysrs Bound to Unmodified Trna-LYS3 (3'-Cca Docked State, Amp Bound) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:68.1 occ:1.00 O6 C:G42 4.7 123.3 1.0 O4 C:U41 4.7 122.6 1.0 N6 C:A43 4.7 122.2 1.0 OP2 C:C25 4.8 120.0 1.0 O4 C:U27 4.8 101.9 1.0

S.C.Devarkar, C.R.Budding, C.Pathirage, A.Kavoor, C.Herbert, P.A.Limbach, K.Musier-Forsyth, Y.Xiong. Structural Basis For Aminoacylation of Cellular Modified TRNALYS3 By Human Lysyl-Trna Synthetase. Nucleic Acids Res. V. 53 2025.
ISSN: ESSN 1362-4962
PubMed: 40036503
DOI: 10.1093/NAR/GKAF114