Sodium in PDB, part 293 (files: 11681-11720),
PDB 8sly-8t8l
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11681-11720 (PDB 8sly-8t8l).
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8sly (Na: 1) - Rat TRPV2 Bound with 2 Cbd Ligands in Nanodiscs
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8sm7 (Na: 3) - Air-Oxidized G. Y4 Truffo Expressed From M9 Minimal Medium Supplemented with Fe
Other atoms:
Fe (8);
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8smh (Na: 1) - Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg)
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8sng (Na: 2) - Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form)
Other atoms:
Mg (2);
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8sp1 (Na: 1) - Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcgiaagtggg)
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8srx (Na: 2) - Crystal Structure of Bak-Bax Heterodimer with Lysopc
Other atoms:
Cl (1);
Zn (1);
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8ss5 (Na: 1) - Structure of Lbd-Tmd of Ampa Receptor GLUA2 in Complex with Auxiliary Subunit Tarp Gamma-5 (Apo State)
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8ss6 (Na: 1) - Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ss7 (Na: 1) - Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ss8 (Na: 2) - Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunit Tarp Gamma-5 Bound to Competitive Antagonist Zk and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ss9 (Na: 2) - Structure of Lbd-Tmd of Ampa Receptor GLUA2 in Complex with Auxiliary Subunit Tarp Gamma-5 Bound to Competitive Antagonist Zk and Antiepileptic Drug Perampanel (Closed State)
Other atoms:
F (12);
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8ssq (Na: 2) - Znfs 3-11 of Ccctc-Binding Factor (Ctcf) Complexed with 35MER Dna 35-4
Other atoms:
Zn (17);
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8ssr (Na: 2) - Znfs 3-11 of Ccctc-Binding Factor (Ctcf) Complexed with 35MER Dna 35- 20
Other atoms:
Zn (17);
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8sss (Na: 1) - Znfs 1-7 of Ccctc-Binding Factor (Ctcf) Complexed with 23MER
Other atoms:
Zn (14);
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8ssz (Na: 1) - The 2ALPHA3BETA Stoichiometry of Full-Length Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine and Calcium
Other atoms:
Ca (2);
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8st0 (Na: 1) - The 2ALPHA3BETA Stoichiometry of Full-Length Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine
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8st1 (Na: 1) - The 3ALPHA2BETA Stoichiometry of Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine and Calcium
Other atoms:
Ca (4);
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8st2 (Na: 1) - The 3ALPHA2BETA Stoichiometry of Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine
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8st3 (Na: 1) - The 2ALPHA3BETA Stoichiometry of Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine and Calcium
Other atoms:
Ca (3);
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8st4 (Na: 1) - The 2ALPHA3BETA Stoichiometry of Human ALPHA4BETA2 Nicotinic Acetylcholine Receptor in Complex with Acetylcholine
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8st5 (Na: 1) - Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC
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8st6 (Na: 2) - Hsa Siglec + Unique Domains Bound to NEU5GC ALPHA2,3 Gal Beta Ome
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8stn (Na: 1) - Crystal Structure of Kras-G12D/G75A Mutant, Gdp-Bound
Other atoms:
Cl (2);
Mg (2);
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8sv0 (Na: 2) - The Crystal Structure of the Classical Binding Interface of Importin Alpha 2 and Nuclear Localisation Signal Sequence in Psittacine Siadenovirus Core Protein VII
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8sv3 (Na: 2) - 7-Deazapurines and 5-Halogenpyrimidine Dna Duplex
Other atoms:
Cl (5);
F (10);
Mg (1);
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8sxw (Na: 1) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Mutation, Apo Structure at pH 6
Other atoms:
Cl (2);
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8sy0 (Na: 2) - X-Ray Crystal Structure of Udp- 2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27 in Complex with Its Product Udp-2,3-Diacetamido-2,3-Dideoxy-D-Mannuronic Acid at pH 9
Other atoms:
Cl (1);
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8syb (Na: 1) - X-Ray Crystal Structure of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid-2-Epimerase From Thermus Thermophilus Strain HB27, D98N Variant in the Presence of Udp-2,3-Diacetamido-2,3-Dideoxy-Glucuronic Acid and Udp-N-Acetylglucosamine at pH 9
Other atoms:
Cl (2);
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8szz (Na: 24) - Cryoem Structure of Computationally Designed Nanocage O32-ZL4
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8t0c (Na: 2) - TRPV1 in Nanodisc Bound with Lysophosphatidic Acid in All Four Monomers
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8t0e (Na: 1) - TRPV1 in Nanodisc Not Bound with Lysophosphatidic Acid (Apo)
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8t0y (Na: 1) - TRPV1 in Nanodisc Bound with One Lpa in One Monomer
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8t10 (Na: 2) - TRPV1 in Nanodisc Bound with Two Lpa Molecules in Opposite Monomers
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8t1b (Na: 4) - Cryo-Em Structure of Full-Length Human TRPV4 in Apo State
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8t1e (Na: 3) - Closed-State Cryo-Em Structure of Full-Length Human TRPV4 in the Presence of 4A-Pdd
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8t1v (Na: 1) - Crystal Structure of Orphan G Protein-Coupled Receptor 6 with Bound Inverse Agonist 3H
Other atoms:
F (2);
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8t3l (Na: 2) - TRPV1 in Nanodisc Bound with 2 Lpa Molecules in Neighboring Monomers
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8t3m (Na: 2) - TRPV1 in Nanodisc Bound with 3 Lpa Molecules
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8t7i (Na: 7) - Structure of the S1CE Variant of Fab F1 (FABS1CE-F1)
Other atoms:
Cl (4);
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8t8l (Na: 1) - Structure of Domain of Unknown Function 507 (DUF507) in Space Group P3(2)21
Page generated: Tue Feb 25 11:42:39 2025
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