Sodium in PDB 8st5: Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC

The structure of Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC, PDB code: 8st5 was solved by K.M.A.Morrison, T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.39 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.067, 57.695, 75.952, 90, 90, 90
R / Rfree (%)	16.5 / 19.9

The binding sites of Sodium atom in the Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC (pdb code 8st5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC, PDB code: 8st5:

Sodium binding site 1 out of 1 in the Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Streptococcus Gordonii Str. Challis Hsa Bound to NEU5AC within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:26.3 occ:1.00 O A:TYR377 2.2 25.9 1.0 O A:HOH808 2.3 29.3 1.0 OD2 A:ASP436 2.4 24.4 1.0 O A:ASN374 2.4 22.2 1.0 O A:HOH812 2.6 38.9 1.0 OD1 A:ASP436 2.6 26.9 1.0 CG A:ASP436 2.8 24.5 1.0 HD3 A:PRO379 3.2 30.4 1.0 C A:ASN374 3.4 21.1 1.0 C A:TYR377 3.4 24.4 1.0 HB2 A:ASN374 3.5 26.2 1.0 H A:TYR377 3.7 25.3 1.0 HA A:GLU375 3.7 26.1 1.0 HA A:ASP378 3.8 32.5 0.4 HA A:ASP378 3.8 32.5 0.6 HD2 A:PRO379 3.9 30.4 1.0 HB2 A:TYR377 4.0 25.4 1.0 CD A:PRO379 4.0 25.3 1.0 HD21 A:ASN374 4.1 37.4 1.0 HH A:TYR430 4.1 26.8 1.0 HA A:ASN374 4.1 25.5 1.0 CA A:ASN374 4.2 21.2 1.0 CB A:ASN374 4.2 21.8 1.0 OD1 A:ASP378 4.2 31.0 0.4 N A:GLU375 4.3 21.2 1.0 N A:TYR377 4.3 21.1 1.0 CA A:TYR377 4.3 22.0 1.0 CB A:ASP436 4.3 22.9 1.0 CA A:GLU375 4.3 21.8 1.0 N A:ASP378 4.4 25.7 1.0 OH A:TYR430 4.5 22.4 1.0 ND2 A:ASN374 4.5 31.1 1.0 HB3 A:ASP436 4.5 27.5 1.0 CA A:ASP378 4.5 27.1 0.4 CA A:ASP378 4.5 27.1 0.6 CB A:TYR377 4.6 21.2 1.0 CG A:ASN374 4.7 26.1 1.0 C A:GLU375 4.7 21.1 1.0 HB2 A:ASP436 4.7 27.5 1.0 HG2 A:PRO379 4.8 30.7 1.0 HE1 A:TYR430 4.8 23.9 1.0 CG A:PRO379 4.9 25.6 1.0 HG3 A:PRO379 4.9 30.7 1.0 O A:HOH607 4.9 44.7 1.0 O A:GLU375 5.0 21.8 1.0 HB3 A:TYR377 5.0 25.4 1.0 O A:HOH769 5.0 30.1 1.0

K.M.A.Morrison, T.M.Iverson. Hsa Siglec +Unique Domains Bound to NEU5AC ALPHA2, 3 Gal To Be Published.