Sodium in PDB 8sng: Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form)

The structure of Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form), PDB code: 8sng was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.82 / 1.55
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	60.084, 101.351, 68.483, 90, 101.78, 90
R / Rfree (%)	19.8 / 22

The structure of Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form) also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form) (pdb code 8sng). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form), PDB code: 8sng:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:20.8 occ:1.00 O A:HOH522 2.2 20.5 1.0 O A:HIS288 2.3 11.3 1.0 O A:HOH686 2.4 20.8 1.0 O A:HOH741 2.4 23.9 1.0 O A:HOH578 2.5 24.3 1.0 C A:HIS288 3.4 12.4 1.0 O A:ASN257 3.9 13.3 1.0 CA A:ALA289 3.9 10.8 1.0 CG A:GLN287 4.0 24.1 1.0 NE2 A:GLN287 4.1 28.1 1.0 CB A:ASN257 4.1 11.3 1.0 N A:ALA289 4.1 11.3 1.0 CB A:ALA261 4.2 11.7 1.0 C A:ALA289 4.3 11.8 1.0 C A:ASN257 4.4 13.9 1.0 O A:ALA289 4.4 13.0 1.0 CD1 A:TRP290 4.4 11.0 1.0 CD A:GLN287 4.5 39.5 1.0 N A:HIS288 4.6 12.0 1.0 CA A:HIS288 4.6 13.7 1.0 O A:HOH771 4.6 27.3 1.0 O A:HOH711 4.6 21.5 1.0 CA A:ASN257 4.8 12.7 1.0 O A:HOH543 4.9 21.7 1.0 CG A:ASN257 4.9 11.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:22.3 occ:1.00 O B:HOH532 2.2 22.9 1.0 O B:HIS288 2.2 11.1 1.0 O B:HOH577 2.4 23.7 1.0 O B:HOH638 2.4 28.8 1.0 O B:HOH742 2.5 22.2 1.0 C B:HIS288 3.4 8.0 1.0 CA B:ALA289 3.8 12.9 1.0 O B:ASN257 3.9 13.2 1.0 CB B:ASN257 4.0 11.0 1.0 N B:ALA289 4.0 9.3 1.0 CG B:GLN287 4.0 20.5 1.0 NE2 B:GLN287 4.1 31.6 1.0 C B:ALA289 4.2 12.0 1.0 CB B:ALA261 4.3 12.6 1.0 C B:ASN257 4.3 11.4 1.0 O B:HOH518 4.3 31.7 1.0 O B:ALA289 4.4 8.6 1.0 CD1 B:TRP290 4.4 12.5 1.0 CD B:GLN287 4.5 29.4 1.0 CA B:HIS288 4.5 10.9 1.0 N B:HIS288 4.5 11.9 1.0 O B:HOH707 4.6 24.8 1.0 CA B:ASN257 4.7 12.7 1.0 CG B:ASN257 4.8 15.4 1.0 O B:HOH643 4.8 22.6 1.0 ND2 B:ASN257 4.8 19.1 1.0 O B:GLY160 4.9 17.0 1.0 N B:TRP290 5.0 9.5 1.0 C B:GLN287 5.0 8.9 1.0

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Arnb Transferase From Klebsiella Aerogenes (Lattice Translocation Disorder, P21 Form) To Be Published.