Sodium in PDB, part 289 (files: 11521-11560),
PDB 8pkw-8qay
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11521-11560 (PDB 8pkw-8qay).
-
8pkw (Na: 3) - Kelch Domain of KEAP1 in Complex with A Ortho-Dimethylbenzene Linked Cyclic Peptide 5 (Ortho-Wrcdeetgec)
Other atoms:
Cl (1);
-
8pkx (Na: 4) - Kelch Domain of KEAP1 in Complex with A Ortho-Dimethylbenzene Linked Cyclic Peptide 11 (Ortho-Wrcdeetgec)
Other atoms:
Cl (2);
-
8pnx (Na: 2) - Crystal Structure of D-Amino Acid Aminotransferase From Blastococcus Saxobsidens in Pmp Form
-
8pob (Na: 1) - Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-SO3
Other atoms:
Tb (2);
Cl (6);
-
8pof (Na: 1) - The Crystal Structure of RSSYMEG1 Reveals A Unique Form of Smaller GH7 Endoglucanases Alongside GH7 Cellobiohydrolases in Protist Symbionts of Termites
-
8pox (Na: 3) - Crystal Structure of the C19G Variant of the Membrane-Bound [Nife]- Hydrogenase From Cupriavidus Necator in the H2-Reduced State at 1.6 A Resolution.
Other atoms:
Mg (1);
Cl (2);
Ni (1);
Fe (16);
-
8pqm (Na: 2) - The Dna-Binding Domain of L-Lactate Utilization Repressor (Lutr-Dbd) From Bacillus Subtilis
-
8ptd (Na: 2) - The Surface-Exposed Lipo-Protein of BTUG1 in Complex with Cyanocobalamin.
Other atoms:
Co (1);
-
8ptf (Na: 6) - The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
Other atoms:
Co (1);
-
8puj (Na: 4) - The Surface-Exposed Lipo-Protein of BTUG2 in Complex with Cyanocobalamin.
Other atoms:
Co (1);
-
8pum (Na: 2) - THA1 L-Threonine Aldolase (Mouse), Monoclinic Form (C2)
-
8pvo (Na: 2) - Crystal Structure of Human Casein Kinase II Subunit Alpha (CK2A1) in Complex with Allosteric Compound FG5
Other atoms:
Cl (2);
-
8pwk (Na: 1) - Human HINT1 in Complex with Compound AT8003
Other atoms:
F (1);
-
8pxt (Na: 4) - Targeting Extended Blood Antigens By Akkermansia Muciniphila Enzymes Unveils A Missing Link For Generating Universal Donor Blood
Other atoms:
Cl (1);
-
8pxv (Na: 1) - Targeting Extended Blood Antigens By Akkermansia Muciniphila Enzymes Unveils A Missing Link For Generating Universal Donor Blood
-
8py0 (Na: 2) - Sensor Domain of Oscillibacter Ruminantium Chemoreceptor in Complex with Formate.
-
8pyo (Na: 1) - 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
-
8pyp (Na: 1) - 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
-
8pyq (Na: 1) - 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
-
8pz0 (Na: 5) - Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14.
Other atoms:
Cl (5);
-
8pzo (Na: 4) - Lpdd
-
8pzy (Na: 1) - Intracellular Leucine Aminopeptidase of Pseudomonas Aeruginosa PA14 - Hexameric Assembly with Manganese Bound
Other atoms:
Mn (12);
-
8q00 (Na: 2) - Tssm-Ub-Pa Complex - A Usp-Like Dub From B. Pseudomallei (193-430) Reacted with Ub-Pa
-
8q1f (Na: 1) - D10N,P146A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis in Complex with Native Beta-Glucose 1,6-Bisphosphate Intermediate
Other atoms:
Mg (6);
-
8q1r (Na: 1) - Mouse KEAP1 in Complex with Stapled Peptide
-
8q1s (Na: 1) - Pathogenic Mutations of Human Phosphorylation Sites Affect Protein- Protein Interactions
Other atoms:
Br (1);
-
8q1w (Na: 3) - TTX183B - A C-Type Cytochrome Domain From the Teredinibacter Turnerae Protein TERTU_2913
Other atoms:
Cl (2);
Fe (3);
-
8q21 (Na: 1) - Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant (A. Marina)
-
8q22 (Na: 2) - Crystal Structure of Vanadium-Dependent Haloperoxidase R425S Mutant in Complex with 1,3,5-Trimethoxybenzene (A. Marina)
-
8q2o (Na: 5) - Structure of Alginate Transporter Alge From P. Aeruginosa PAO1 By Using Se-Mag For the the Lipid Cubic Phase Crystallization
-
8q3v (Na: 6) - Cryo-Em Structure of the Methanogenic Na+ Translocating N5-Methyl- H4MPT:Com Methyltransferase Complex
Other atoms:
Mg (3);
-
8q57 (Na: 2) - Crystal Structure of Class II Sfp Aldolase From Yersinia Aldovae (Yasqia-Zn-SO4) with Bound Sulfate Ions
Other atoms:
Zn (4);
-
8q59 (Na: 2) - Crystal Structure of Metal-Dependent Class II Sulfofructose Phosphate Aldolase From Yersinia Aldovae in Complex with Sulfofructose Phosphate (Yasqia-Zn-Sfp)
Other atoms:
Zn (2);
-
8q5z (Na: 1) - Crystal Structure of Bovine Thiosulfate Sulfurtransferase
-
8q6k (Na: 1) - Human Igd Fab in Complex with An Orthosteric Inhibitor of Phl P 7
-
8q6s (Na: 2) - A Carbohydrate Esterase Family 15 (CE15) Glucuronoyl Esterase From Phocaeicola Vulgatus Atcc 8482
-
8q7i (Na: 2) - Pcna From Chaetomium Thermophilum in Complex with FEN1 Peptide
-
8q8h (Na: 4) - Crystal Structure of Apo Beta-D-Galnacase From Niabella Aurantiaca (Structure 2)
-
8qaw (Na: 2) - Medicago Truncatula HISN5 (Igpd) in Complex with Mn, Imd, Edo, Fmt, Gol and Trs
Other atoms:
Mn (16);
Cl (2);
-
8qay (Na: 1) - Medicago Truncatula HISN5 (Igpd) in Complex with Mn, Fmt, Act, Cit, Edo, SO4
Other atoms:
Mn (16);
Page generated: Sat Aug 23 06:32:21 2025
|
