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Sodium in PDB 8pyp: 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

Enzymatic activity of 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

All present enzymatic activity of 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.:
3.2.1.17;

Protein crystallography data

The structure of 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyp was solved by T.J.Mason, M.Carrillo, J.H.Beale, C.Padeste, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.05 / 1.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.2, 79.2, 38.2, 90, 90, 90
R / Rfree (%) 15.3 / 19.7

Other elements in 8pyp:

The structure of 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. (pdb code 8pyp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyp:

Sodium binding site 1 out of 1 in 8pyp

Go back to Sodium Binding Sites List in 8pyp
Sodium binding site 1 out of 1 in the 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:23.8
occ:1.00
 O A:SER60 2.3 23.6 1.0
O A:CYS64 2.4 21.0 1.0
O A:ARG73 2.5 26.4 0.5
OG A:SER72 2.5 27.5 1.0
O A:ARG73 2.5 25.8 0.5
O A:HOH362 2.5 31.4 1.0
O A:HOH347 2.6 27.4 1.0
CB A:SER72 3.3 27.2 1.0
C A:CYS64 3.5 19.9 1.0
C A:SER60 3.5 21.0 1.0
C A:ARG73 3.5 27.6 0.5
C A:ARG73 3.5 27.3 0.5
N A:ARG73 3.9 29.3 0.5
N A:ARG73 3.9 29.6 0.5
CA A:ASN65 4.0 22.1 1.0
C A:SER72 4.1 29.7 1.0
CA A:SER60 4.1 17.5 1.0
N A:ASN65 4.1 20.2 1.0
CB A:SER60 4.3 18.3 1.0
CA A:ARG73 4.3 29.4 0.5
CA A:ARG73 4.3 29.8 0.5
CA A:SER72 4.3 27.5 1.0
N A:CYS64 4.4 20.1 1.0
N A:ASN74 4.4 26.7 1.0
C A:ARG61 4.5 24.2 0.6
C A:ARG61 4.6 24.1 0.4
N A:ARG61 4.6 22.3 0.4
N A:ARG61 4.6 22.2 0.6
O A:ARG61 4.6 25.5 0.6
CA A:CYS64 4.6 19.3 1.0
CA A:ASN74 4.6 25.4 1.0
O A:SER72 4.6 31.1 1.0
O A:ARG61 4.7 24.9 0.4
N A:ASP66 4.7 21.3 1.0
CB A:THR69 4.8 22.8 1.0
CB A:ASN74 4.8 24.4 1.0
CA A:ARG61 4.8 24.0 0.4
CL A:CL203 4.8 36.5 1.0
CA A:ARG61 4.8 24.4 0.6
N A:TRP62 4.8 23.8 1.0
O A:HOH392 4.8 56.9 1.0
OD1 A:ASN65 4.8 35.5 1.0
CB A:ASN65 4.9 25.0 1.0
C A:ASN65 4.9 22.7 1.0
O A:THR69 4.9 26.4 1.0

Reference:

M.Carrillo, T.J.Mason, A.Karpik, I.Martiel, M.W.Kepa, K.E.Mcauley, J.H.Beale, C.Padeste. Micro-Structured Polymer Fixed-Targets For Serial Crystallography at Synchrotrons and Xfels To Be Published.
Page generated: Mon Aug 18 15:07:50 2025

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