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Sodium in PDB 8pyo: 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

Enzymatic activity of 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.

All present enzymatic activity of 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.:
3.2.1.17;

Protein crystallography data

The structure of 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyo was solved by T.J.Mason, M.Carrillo, J.H.Beale, C.Padeste, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.05 / 1.54
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.2, 79.2, 38.2, 90, 90, 90
R / Rfree (%) 17.1 / 20.2

Other elements in 8pyo:

The structure of 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. (pdb code 8pyo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography., PDB code: 8pyo:

Sodium binding site 1 out of 1 in 8pyo

Go back to Sodium Binding Sites List in 8pyo
Sodium binding site 1 out of 1 in the 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:20.1
occ:1.00
 O A:SER60 2.3 20.0 1.0
O A:CYS64 2.4 20.4 1.0
O A:ARG73 2.4 26.7 0.6
O A:HOH384 2.4 28.2 1.0
O A:ARG73 2.5 26.6 0.4
OG A:SER72 2.6 25.9 1.0
O A:HOH340 2.7 25.3 1.0
CB A:SER72 3.3 21.3 1.0
C A:CYS64 3.4 16.1 1.0
C A:ARG73 3.5 27.1 0.6
C A:ARG73 3.5 27.0 0.4
C A:SER60 3.5 18.9 1.0
N A:ARG73 3.9 24.0 0.4
N A:ARG73 3.9 23.8 0.6
CA A:ASN65 4.0 20.9 1.0
C A:SER72 4.1 30.6 1.0
N A:ASN65 4.1 18.6 1.0
CA A:SER60 4.1 16.5 1.0
CB A:SER60 4.3 16.9 1.0
CA A:ARG73 4.3 24.6 0.4
CA A:ARG73 4.3 24.5 0.6
N A:CYS64 4.3 15.8 1.0
CA A:SER72 4.4 28.6 1.0
N A:ASN74 4.4 26.2 1.0
O A:ARG61 4.5 20.9 0.6
C A:ARG61 4.5 23.8 0.6
CA A:ASN74 4.5 23.5 1.0
CA A:CYS64 4.6 15.4 1.0
N A:ARG61 4.6 18.6 0.6
N A:ARG61 4.6 18.6 0.4
O A:SER72 4.7 29.7 1.0
C A:ARG61 4.7 23.7 0.4
CB A:ASN74 4.7 21.3 1.0
O A:HOH393 4.7 38.4 1.0
N A:ASP66 4.8 17.7 1.0
CA A:ARG61 4.8 21.6 0.6
CA A:ARG61 4.8 21.6 0.4
CB A:THR69 4.8 20.4 1.0
O A:ARG61 4.8 21.2 0.4
N A:TRP62 4.8 19.7 1.0
CB A:ASN65 4.9 20.3 1.0
CL A:CL203 4.9 35.9 1.0
C A:ASN65 4.9 17.5 1.0
OD1 A:ASN65 5.0 28.6 1.0
N A:TRP63 5.0 18.7 1.0
O A:THR69 5.0 25.7 1.0

Reference:

M.Carrillo, T.J.Mason, A.Karpik, I.Martiel, M.W.Kepa, K.E.Mcauley, J.H.Beale, C.Padeste. Micro-Structured Polymer Fixed-Targets For Serial Crystallography at Synchrotrons and Xfels To Be Published.
Page generated: Mon Aug 18 15:07:47 2025

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