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Sodium in PDB, part 283 (files: 11281-11320), PDB 8gkm-8hcg

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11281-11320 (PDB 8gkm-8hcg).
  1. 8gkm (Na: 1) - A1 Leu Graft + Leu: Adenylation Domain 1 Core Construct From Teicoplanin Biosynthesis, Leucine Selection Pocket Graft; Leucine Bound
  2. 8gko (Na: 1) - Crystal Structure Analysis of Aspergillus Fumigatus Alkaline Protease
  3. 8gkp (Na: 3) - Crystal Structure Analysis of Aspergillus Fumigatus Alkaline Protease
  4. 8glh (Na: 1) - Crystal Structure of Human CD1B in Complex with Endogenous Pc C40:5
    Other atoms: I (3);
  5. 8gmv (Na: 1) - Crystal Structure of Lysozyme
    Other atoms: Cl (3);
  6. 8gmw (Na: 1) - Crystal Structure of Lysozyme
    Other atoms: Cl (4);
  7. 8gn9 (Na: 1) - Spfh Domain of Pyrococcus Horikoshii Stomatin
  8. 8gne (Na: 1) - Crystal Structure of Human Adenosine A2A Receptor in Complex with An Insurmountable Inverse Agonist, Kw-6356.
  9. 8gnk (Na: 1) - Cryoem Structure of Cytosol-Facing, Substrate-Bound RATGAT1
    Other atoms: Cl (1);
  10. 8gpc (Na: 1) - Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Ampicillin
    Other atoms: Zn (4);
  11. 8gpz (Na: 1) - Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with C239- 0012
  12. 8gq0 (Na: 2) - Crystal Structure of BRD4 Bromodomain 1 (BD1) in Complex with STL233497
  13. 8gqz (Na: 1) - Crystal Structure of Mitochondrial Citrate Synthase (CIT1) From Saccharomyces Cerevisiae
    Other atoms: Cl (5);
  14. 8gr6 (Na: 2) - Crystal Structure of Pilus-Specific Sortase C From Streptococcus Sanguinis
    Other atoms: Zn (1);
  15. 8gsg (Na: 1) - T3R3 Form of Human Insulin with Single Zn
    Other atoms: Cl (1); Zn (1);
  16. 8gt0 (Na: 25) - Structure of Falcipain and Human Stefin A Complex
    Other atoms: Cl (1);
  17. 8gt7 (Na: 44) - Structure of Falcipain and Human Stefin A Mutant Complex
  18. 8gvm (Na: 4) - The Structure of Azide-Bound Cytochrome C Oxidase Determined Using the Crystals Exposed to 20 Mm Azide Solution For 4 Days
    Other atoms: Cu (6); Zn (2); Fe (6); Mg (2);
  19. 8gyr (Na: 5) - Crystal Structure of A Variable Region Segment of Leptospira Host- Interacting Outer Surface Protein, Liga
    Other atoms: Ca (2); Cl (1); K (5); I (2);
  20. 8gz1 (Na: 2) - Cryo-Em Structure of Human NAV1.6/BETA1/BETA2,Apo State
  21. 8h1b (Na: 1) - Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A)
  22. 8h1g (Na: 1) - The R406T Mutant Form of the Aquifex Aeolicus Mutl Endonuclease Domain
    Other atoms: Cd (4);
  23. 8h2b (Na: 2) - Crystal Structure of Alcohol Dehydrogenase From Zobellia Galactanivorans
    Other atoms: Zn (8);
  24. 8h58 (Na: 15) - Crystal Structure of Yhaj Effector Binding Domain
  25. 8h5a (Na: 16) - Crystal Structure of Yhaj Effector Binding Domain (Ligand-Bound)
  26. 8h63 (Na: 3) - Crystal Structure of Internalin A From Listeria Monocytogenes with Nanobody VHH10 Bound
  27. 8h7n (Na: 1) - Structure of Nanobody 11A in Complex with Triazophos
  28. 8h8p (Na: 4) - Crystal Structure of Thiomorpholine-Carboxylate Dehydrogenase From Candida Parapsilosis.
    Other atoms: Mg (2); Cl (4);
  29. 8h8q (Na: 1) - Fab-Amyloid Beta Fragment Complex at Neutral pH
    Other atoms: Cl (1);
  30. 8h8t (Na: 1) - Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (50 Ms, Edge)
    Other atoms: Cl (2);
  31. 8h8u (Na: 1) - Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (50 Ms, Center)
    Other atoms: Cl (2);
  32. 8h8v (Na: 1) - Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Edge)
    Other atoms: Cl (2);
  33. 8h8w (Na: 1) - Room-Temperature Structure of Lysozyme By Pink-Beam Serial Crystallography (100 Ms, Center)
    Other atoms: Cl (2);
  34. 8h9o (Na: 1) - Crystal Structure of Voltage-Gated Sodium Channel Navab N49K Mutant in Sodium Ion Condition
  35. 8h9x (Na: 2) - Crystal Structure of Voltage-Gated Sodium Channel Navab N49K/L176Q Mutant in Sodium Ion Condition
  36. 8ha1 (Na: 2) - Crystal Structure of Voltage-Gated Sodium Channel Navab N49K/L176G Mutant in Sodium Ion Condition
  37. 8hap (Na: 2) - Crystal Structure of Thermostable Acetaldehyde Dehydrogenase From Hyperthermophilic Archaeon Sulfolobus Tokodaii
  38. 8hb0 (Na: 1) - Structure of Human SGLT2-MAP17 Complex with TA1887
    Other atoms: F (1);
  39. 8hcc (Na: 5) - Crystal Structure of MTREX1-Rna Product Complex (Amp)
    Other atoms: Mg (8);
  40. 8hcg (Na: 2) - Crystal Structure of MTREX1-Damp Complex
    Other atoms: Mg (2);
Page generated: Sat Aug 23 06:32:07 2025

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