Sodium in PDB 8h8q: Fab-Amyloid Beta Fragment Complex at Neutral pH

The structure of Fab-Amyloid Beta Fragment Complex at Neutral pH, PDB code: 8h8q was solved by A.Kita, K.Irie, Y.Irie, Y.Matsushima, K.Miki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.26 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.04, 94.15, 115.44, 90, 90, 90
R / Rfree (%)	21.1 / 27.5

The structure of Fab-Amyloid Beta Fragment Complex at Neutral pH also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Fab-Amyloid Beta Fragment Complex at Neutral pH (pdb code 8h8q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Fab-Amyloid Beta Fragment Complex at Neutral pH, PDB code: 8h8q:

Sodium binding site 1 out of 1 in the Fab-Amyloid Beta Fragment Complex at Neutral pH


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Fab-Amyloid Beta Fragment Complex at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ H:Na302 b:15.1 occ:1.00 OG H:SER35 2.7 3.8 1.0 O H:TRP33 3.2 5.1 1.0 N H:SER35 3.3 4.2 1.0 CD2 H:PHE99 3.4 9.5 1.0 CB H:SER35 3.4 4.1 1.0 CG H:PHE99 3.4 10.0 1.0 CE2 H:PHE99 3.4 10.3 1.0 CZ H:PHE99 3.6 9.8 1.0 CD1 H:PHE99 3.6 9.8 1.0 CE1 H:PHE99 3.6 9.6 1.0 N H:PHE99 3.7 10.4 1.0 C H:TRP33 3.7 4.9 1.0 O H:ALA97 3.8 10.8 1.0 C H:VAL34 3.9 4.3 1.0 CA H:SER35 3.9 4.4 1.0 CB H:TRP33 3.9 5.1 1.0 CE1 H:PHE106 4.0 7.6 1.0 CA H:VAL34 4.0 4.5 1.0 N H:VAL34 4.1 4.7 1.0 CA H:LEU98 4.2 11.0 1.0 CB H:PHE99 4.3 10.3 1.0 C H:LEU98 4.3 10.9 1.0 CA H:PHE99 4.4 10.3 1.0 C H:ALA97 4.5 10.7 1.0 CA H:TRP33 4.5 5.1 1.0 CD1 H:PHE106 4.5 7.9 1.0 N H:LEU98 4.6 10.9 1.0 CB H:MET50 4.6 7.7 1.0 O H:VAL34 4.7 3.9 1.0 SD H:MET50 4.8 8.5 1.0

K.Irie, Y.Irie, Y.Matsushima, A.Kita, K.Miki. Fab-Amyloid Beta Fragment Complex at Neutral pH To Be Published.