Atomistry » Sodium » PDB 8gkm-8hcg » 8h1b
Atomistry »
  Sodium »
    PDB 8gkm-8hcg »
      8h1b »

Sodium in PDB 8h1b: Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A)

Protein crystallography data

The structure of Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A), PDB code: 8h1b was solved by J.Kim, G.Cho, J.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.12 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.436, 71.494, 67.267, 90, 111.6, 90
R / Rfree (%) 17.4 / 20.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A) (pdb code 8h1b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A), PDB code: 8h1b:

Sodium binding site 1 out of 1 in 8h1b

Go back to Sodium Binding Sites List in 8h1b
Sodium binding site 1 out of 1 in the Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na101

b:43.3
occ:1.00
OP2 C:G36 2.0 25.5 1.0
O C:HOH201 2.1 23.4 1.0
O C:HOH217 2.1 35.3 1.0
O C:HOH224 2.1 34.3 1.0
P C:G36 3.3 27.1 1.0
O5' C:G36 3.7 28.0 1.0
OP1 C:U35 3.8 21.9 1.0
O C:HOH235 3.9 48.0 1.0
OP1 C:G36 4.1 28.9 1.0
OP2 C:U35 4.3 20.3 1.0
C8 C:G36 4.4 28.9 1.0
N4 C:C32 4.4 36.5 1.0
N7 C:G36 4.4 28.4 1.0
P C:U35 4.4 20.7 1.0
OP2 C:A37 4.4 32.3 1.0
O3' C:U35 4.5 26.0 1.0
N7 C:A37 4.8 32.0 1.0
C3' C:U35 4.8 24.3 1.0
O C:HOH238 4.8 52.6 1.0
O5' C:U35 4.9 21.3 1.0

Reference:

J.Kim, G.Cho, J.Lee. Crystal Structure of Mnmm From S. Aureus Complexed with Sam and Trna Anti-Codon Stem Loop (Asl) (1.55 A) To Be Published.
Page generated: Mon Aug 18 14:22:15 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy