Sodium in PDB, part 282 (files: 11241-11280),
PDB 8ft3-8gmv
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11241-11280 (PDB 8ft3-8gmv).
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8ft3 (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
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8ft4 (Na: 2) - Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev
Other atoms:
Cl (2);
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8ft5 (Na: 2) - Crystal Structure of Leut Soaked with Crown-5
Other atoms:
Cl (1);
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8fty (Na: 1) - Crystal Structure of the Carotenoid Isomerooxygenase, Ninab
Other atoms:
Cl (3);
As (1);
Fe (8);
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8fui (Na: 2) - Hiv-1 Wild Type Protease with Grl-02519A, with N-(2,5-Dimethylphenyl)- 4-(Pyridin-3-Yl)Pyrimidin-2-Amine As P2-P3 Group
Other atoms:
Cl (4);
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8fuj (Na: 1) - Hiv-1 Wild Type Protease with Grl-03419A, with N-(2,5-Dimethylphenyl)- 4-(Pyridin-3-Yl)Pyrimidin-2-Amine As P2-P3 Group and 3,5- Difluorophenylmethyl As the P1 Group
Other atoms:
Cl (4);
F (4);
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8fvw (Na: 1) - Cryoem Structure of E.Coli Transcription Elongation Complex Bound to Ppgpp
Other atoms:
Mg (2);
Zn (2);
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8fwa (Na: 1) - Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography
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8fwq (Na: 1) - Structure of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344
Other atoms:
F (4);
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8fws (Na: 6) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344
Other atoms:
Cl (2);
F (4);
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8fwu (Na: 8) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Competitive Antagonist Dnqx
Other atoms:
F (4);
Cl (2);
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8fww (Na: 7) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel
Other atoms:
Cl (2);
F (4);
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8fxq (Na: 1) - The Crystal Sturucture of Rhizopuspepsin with A Bound Modified Peptide Inhibitor Generated By De Novo Drug Design.
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8fyn (Na: 1) - Microed Structure of A2A From Plasma Milled Lamellae
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8fyv (Na: 6) - Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine
Other atoms:
Cl (9);
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8g0i (Na: 2) - High Affinity Nanobodies Against Gfp
Other atoms:
Cl (2);
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8g18 (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-108
Other atoms:
F (4);
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8g1l (Na: 2) - Lectin Domain of Aap (Staphylococcus Epidermidis Accumulation Associated Protein)
Other atoms:
Mg (3);
Ca (1);
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8g1q (Na: 1) - Co-Crystal Structure of Compound 1 in Complex with the Bromodomain of Human SMARCA4 and Pvhl:Elonginc:Elonginb
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8g1y (Na: 5) - Crystal Structure of the Threonine Synthase From Streptococcus Pneumoniae in Complex with Pyridoxal 5-Phosphate.
Other atoms:
Cl (1);
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8g2e (Na: 1) - PKM2 Bound to Compound 2
Other atoms:
Mg (1);
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8g2h (Na: 1) - Crystal Structure of PRMT4 with Compound YD1113
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8g62 (Na: 2) - Papain-Like Protease of Sars Cov-2 in Complex with Remodilin Ncgc 390004
Other atoms:
Cl (6);
Zn (3);
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8g8a (Na: 4) - Crystal Structure of DH1317.8 Fab in Complex with Hiv Proximal Mper Peptide
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8g8d (Na: 10) - Crystal Structure of DH1346 Fab in Complex with Hiv Proximal Mper Peptide
Other atoms:
F (1);
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8g8v (Na: 2) - Gtp Cyclohydrolase-Ib with Sodium
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8gbt (Na: 2) - Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase
Other atoms:
Cu (6);
Fe (4);
Zn (2);
Mg (2);
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8gcq (Na: 2) - Sfx Structure of Oxidized Cytochrome C Oxidase at 2.38 Angstrom Resolution
Other atoms:
Mg (2);
Cu (6);
Zn (2);
Fe (4);
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8gf8 (Na: 2) - Cryo-Em Structure of Human TRPV1 in CNW11 Nanodisc and Soybean Lipids
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8gf9 (Na: 2) - Cryo-Em Structure of Human TRPV1 in CNW11 Nanodisc and Popc:Pope:Popg Lipids
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8gfa (Na: 2) - Cryo-Em Structure of Human TRPV1 in Complex with the Analgesic Drug Sb-366791
Other atoms:
Cl (4);
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8ghf (Na: 4) - Cryo-Em Structure of HSLO1 in Plasma Membrane Vesicles
Other atoms:
Mg (4);
Ca (8);
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8gi8 (Na: 1) - Kalium Channelrhodopsin 1 From Hyphochytrium Catenoides (HCKCR1) Embedded in Peptidisc
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8gi9 (Na: 3) - Cation Channelrhodopsin From Hyphochytrium Catenoides (Hcccr) Embedded in Peptidisc
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8gka (Na: 1) - Human TRPV3 Tetramer Structure, Closed Conformation
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8gkm (Na: 1) - A1 Leu Graft + Leu: Adenylation Domain 1 Core Construct From Teicoplanin Biosynthesis, Leucine Selection Pocket Graft; Leucine Bound
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8gko (Na: 1) - Crystal Structure Analysis of Aspergillus Fumigatus Alkaline Protease
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8gkp (Na: 3) - Crystal Structure Analysis of Aspergillus Fumigatus Alkaline Protease
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8glh (Na: 1) - Crystal Structure of Human CD1B in Complex with Endogenous Pc C40:5
Other atoms:
I (3);
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8gmv (Na: 1) - Crystal Structure of Lysozyme
Other atoms:
Cl (3);
Page generated: Tue Feb 25 11:41:57 2025
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