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Sodium in PDB, part 282 (files: 11241-11280), PDB 8fsx-8gka

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11241-11280 (PDB 8fsx-8gka).
  1. 8fsx (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  2. 8fsy (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  3. 8ft0 (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  4. 8ft1 (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  5. 8ft2 (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  6. 8ft3 (Na: 1) - Crystal Structure of Hen Egg White Lysozyme
  7. 8ft4 (Na: 2) - Multicrystal Structure of Na+, Leucine-Bound Leut Determined at 5 Kev
    Other atoms: Cl (2);
  8. 8ft5 (Na: 2) - Crystal Structure of Leut Soaked with Crown-5
    Other atoms: Cl (1);
  9. 8fty (Na: 1) - Crystal Structure of the Carotenoid Isomerooxygenase, Ninab
    Other atoms: Cl (3); As (1); Fe (8);
  10. 8fui (Na: 2) - Hiv-1 Wild Type Protease with Grl-02519A, with N-(2,5-Dimethylphenyl)- 4-(Pyridin-3-Yl)Pyrimidin-2-Amine As P2-P3 Group
    Other atoms: Cl (4);
  11. 8fuj (Na: 1) - Hiv-1 Wild Type Protease with Grl-03419A, with N-(2,5-Dimethylphenyl)- 4-(Pyridin-3-Yl)Pyrimidin-2-Amine As P2-P3 Group and 3,5- Difluorophenylmethyl As the P1 Group
    Other atoms: Cl (4); F (4);
  12. 8fvw (Na: 1) - Cryoem Structure of E.Coli Transcription Elongation Complex Bound to Ppgpp
    Other atoms: Mg (2); Zn (2);
  13. 8fwa (Na: 1) - Phycocyanin Structure From A Modular Droplet Injector For Serial Femtosecond Crystallography
  14. 8fwq (Na: 1) - Structure of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344
    Other atoms: F (4);
  15. 8fws (Na: 6) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344
    Other atoms: Cl (2); F (4);
  16. 8fwu (Na: 8) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Competitive Antagonist Dnqx
    Other atoms: F (4); Cl (2);
  17. 8fww (Na: 7) - Structure of the Ligand-Binding and Transmembrane Domains of Kainate Receptor GLUK2 in Complex with the Positive Allosteric Modulator BPAM344 and Noncompetitive Inhibitor Perampanel
    Other atoms: Cl (2); F (4);
  18. 8fxq (Na: 1) - The Crystal Sturucture of Rhizopuspepsin with A Bound Modified Peptide Inhibitor Generated By De Novo Drug Design.
  19. 8fyn (Na: 1) - Microed Structure of A2A From Plasma Milled Lamellae
  20. 8fyv (Na: 6) - Salmonella Enterica Serovar Typhimurium Chemoreceptor Tsr (Taxis to Serine and Repellents) Ligand-Binding Domain in Complex with L-Serine
    Other atoms: Cl (9);
  21. 8g0i (Na: 2) - High Affinity Nanobodies Against Gfp
    Other atoms: Cl (2);
  22. 8g18 (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-108
    Other atoms: F (4);
  23. 8g1l (Na: 2) - Lectin Domain of Aap (Staphylococcus Epidermidis Accumulation Associated Protein)
    Other atoms: Mg (3); Ca (1);
  24. 8g1q (Na: 1) - Co-Crystal Structure of Compound 1 in Complex with the Bromodomain of Human SMARCA4 and Pvhl:Elonginc:Elonginb
  25. 8g1y (Na: 5) - Crystal Structure of the Threonine Synthase From Streptococcus Pneumoniae in Complex with Pyridoxal 5-Phosphate.
    Other atoms: Cl (1);
  26. 8g2e (Na: 1) - PKM2 Bound to Compound 2
    Other atoms: Mg (1);
  27. 8g2h (Na: 1) - Crystal Structure of PRMT4 with Compound YD1113
  28. 8g62 (Na: 2) - Papain-Like Protease of Sars Cov-2 in Complex with Remodilin Ncgc 390004
    Other atoms: Cl (6); Zn (3);
  29. 8g8a (Na: 4) - Crystal Structure of DH1317.8 Fab in Complex with Hiv Proximal Mper Peptide
  30. 8g8d (Na: 10) - Crystal Structure of DH1346 Fab in Complex with Hiv Proximal Mper Peptide
    Other atoms: F (1);
  31. 8g8v (Na: 2) - Gtp Cyclohydrolase-Ib with Sodium
  32. 8gbt (Na: 2) - Time-Resolve Sfx Structure of A Photoproduct of Carbon Monoxide Complex of Bovine Cytochrome C Oxidase
    Other atoms: Cu (6); Fe (4); Zn (2); Mg (2);
  33. 8gcq (Na: 2) - Sfx Structure of Oxidized Cytochrome C Oxidase at 2.38 Angstrom Resolution
    Other atoms: Mg (2); Cu (6); Zn (2); Fe (4);
  34. 8gf8 (Na: 2) - Cryo-Em Structure of Human TRPV1 in CNW11 Nanodisc and Soybean Lipids
  35. 8gf9 (Na: 2) - Cryo-Em Structure of Human TRPV1 in CNW11 Nanodisc and Popc:Pope:Popg Lipids
  36. 8gfa (Na: 2) - Cryo-Em Structure of Human TRPV1 in Complex with the Analgesic Drug Sb-366791
    Other atoms: Cl (4);
  37. 8ghf (Na: 4) - Cryo-Em Structure of HSLO1 in Plasma Membrane Vesicles
    Other atoms: Mg (4); Ca (8);
  38. 8gi8 (Na: 1) - Kalium Channelrhodopsin 1 From Hyphochytrium Catenoides (HCKCR1) Embedded in Peptidisc
  39. 8gi9 (Na: 3) - Cation Channelrhodopsin From Hyphochytrium Catenoides (Hcccr) Embedded in Peptidisc
  40. 8gka (Na: 1) - Human TRPV3 Tetramer Structure, Closed Conformation
Page generated: Sat Aug 23 06:32:05 2025

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