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Sodium in PDB 8fsy: Crystal Structure of Hen Egg White Lysozyme

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme, PDB code: 8fsy was solved by L.M.T.R.Lima, N.G.Ramos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 13.41 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.381, 77.381, 37.162, 90, 90, 90
R / Rfree (%) 23.6 / 28.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme (pdb code 8fsy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme, PDB code: 8fsy:

Sodium binding site 1 out of 1 in 8fsy

Go back to Sodium Binding Sites List in 8fsy
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:25.9
occ:1.00
O A:HOH369 2.3 10.6 1.0
O A:SER60 2.3 20.1 1.0
O A:CYS64 2.4 11.9 1.0
O A:ARG73 2.6 20.9 1.0
OG A:SER72 2.6 32.7 1.0
CB A:SER72 3.4 31.0 1.0
C A:SER60 3.5 17.0 1.0
C A:CYS64 3.5 12.0 1.0
C A:ARG73 3.6 22.2 1.0
CA A:ASN65 3.8 12.8 1.0
CA A:SER60 4.0 14.8 1.0
N A:ASN65 4.0 12.1 1.0
N A:ARG73 4.2 28.5 1.0
CB A:SER60 4.2 13.7 1.0
C A:SER72 4.2 30.3 1.0
O A:HOH421 4.4 30.0 1.0
N A:ASN74 4.4 18.3 1.0
CA A:SER72 4.4 31.7 1.0
OD1 A:ASN65 4.4 16.9 1.0
N A:ASP66 4.5 12.2 1.0
CA A:ARG73 4.5 24.3 1.0
N A:ARG61 4.6 19.9 1.0
N A:CYS64 4.6 12.1 1.0
CA A:ASN74 4.6 16.6 1.0
CB A:THR69 4.6 15.3 1.0
CB A:ASN65 4.6 14.0 1.0
O A:SER72 4.6 28.3 1.0
CA A:CYS64 4.7 12.2 1.0
O A:ARG61 4.7 25.8 1.0
C A:ARG61 4.7 20.9 1.0
C A:ASN65 4.7 12.3 1.0
CB A:ASN74 4.7 15.8 1.0
CA A:ARG61 4.9 22.6 1.0
O A:THR69 4.9 18.0 1.0
OG A:SER60 5.0 13.3 1.0
N A:TRP62 5.0 18.6 1.0

Reference:

L.M.T.R.Lima, N.G.Ramos. Crystal Structure of Hen Egg White Lysozyme To Be Published.
Page generated: Mon Aug 18 14:13:20 2025

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