Sodium in PDB 8fyn: Microed Structure of A2A From Plasma Milled Lamellae

The binding sites of Sodium atom in the Microed Structure of A2A From Plasma Milled Lamellae (pdb code 8fyn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Microed Structure of A2A From Plasma Milled Lamellae, PDB code: 8fyn:

Sodium binding site 1 out of 1 in the Microed Structure of A2A From Plasma Milled Lamellae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microed Structure of A2A From Plasma Milled Lamellae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na2426 b:5.8 occ:1.00 H A:VAL84 2.3 5.5 1.0 O A:ILE80 2.6 11.2 1.0 HB3 A:PHE83 2.7 6.1 0.0 HD2 A:PHE62 2.8 7.8 1.0 HB A:VAL84 2.9 8.0 0.1 N A:VAL84 3.0 5.5 1.0 H A:PHE83 3.1 6.1 1.0 HB2 A:PHE62 3.2 7.3 0.5 HB3 A:PHE62 3.3 7.4 1.0 HA A:ALA59 3.5 7.4 1.0 N A:PHE83 3.5 6.2 1.0 CB A:PHE83 3.6 6.2 1.0 HG12 A:VAL84 3.6 8.9 0.4 CB A:VAL84 3.6 7.7 1.0 C A:ILE80 3.6 8.4 1.0 CB A:PHE62 3.7 7.3 1.0 CD2 A:PHE62 3.7 7.9 1.0 C A:PHE83 3.8 5.2 1.0 HG13 A:VAL84 3.8 9.1 0.0 CA A:PHE83 3.8 5.8 1.0 O A:ALA81 3.8 11.0 1.0 CA A:VAL84 3.9 6.3 1.0 HD2 A:PHE83 3.9 7.1 0.4 CG1 A:VAL84 3.9 9.8 1.0 C A:ALA81 3.9 8.3 1.0 HB1 A:ALA59 4.1 8.5 1.0 HB2 A:PHE83 4.1 6.3 0.0 HA A:ALA81 4.1 8.4 0.0 CG A:PHE62 4.2 7.4 1.0 HA A:VAL84 4.2 6.3 0.0 HA A:ILE80 4.2 7.8 1.0 O A:HOH2540 4.3 7.7 1.0 O A:PHE79 4.3 7.2 1.0 CA A:ALA59 4.3 7.3 1.0 N A:CYS82 4.3 7.5 1.0 C A:CYS82 4.4 7.5 1.0 O A:ALA59 4.4 7.5 1.0 CA A:ALA81 4.4 8.3 1.0 N A:ALA81 4.4 8.2 1.0 CD2 A:PHE83 4.6 6.7 1.0 CA A:ILE80 4.6 8.1 1.0 CG A:PHE83 4.6 7.4 1.0 CB A:ALA59 4.6 9.0 1.0 H A:CYS82 4.6 7.6 1.0 HB2 A:ALA59 4.7 8.6 0.9 HA A:PHE83 4.8 5.6 0.0 CE2 A:PHE62 4.8 8.7 1.0 C A:ALA59 4.9 7.6 1.0 CA A:CYS82 4.9 7.4 1.0 HG11 A:VAL84 4.9 9.1 0.5 HE2 A:PHE62 4.9 8.2 1.0 H A:LEU85 4.9 6.1 1.0 O A:PHE83 4.9 5.7 1.0 HG23 A:ILE80 4.9 8.8 0.0 CG2 A:VAL84 5.0 9.0 1.0

M.W.Martynowycz, A.Shiriaeva, M.T.B.Clabbers, W.J.Nicolas, S.J.Weaver, J.Hattne, T.Gonen. A Robust Approach For Microed Sample Preparation of Lipidic Cubic Phase Embedded Membrane Protein Crystals. Nat Commun V. 14 1086 2023.
ISSN: ESSN 2041-1723
PubMed: 36841804
DOI: 10.1038/S41467-023-36733-4