Sodium in PDB, part 279 (files: 11121-11160),
PDB 8ds1-8elm
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11121-11160 (PDB 8ds1-8elm).
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8ds1 (Na: 5) - Structure of Sars-Cov-2 Mpro in Complex with NSP12-NSP13 (C12) Cut Site Sequence
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8ds2 (Na: 1) - Structure of Sars-Cov-2 Mpro in Complex with the NSP13-NSP14 (C13) Cut Site Sequence (Form 2)
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8dsc (Na: 1) - Human Nampt in Complex with Substrate Nam and Small Molecule Activator Np-A1-R
Other atoms:
Cl (3);
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8dt6 (Na: 2) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
Other atoms:
Ca (9);
Cl (2);
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8dt9 (Na: 9) - Crystal Structure of Sars Cov-2 Mpro Mutant L141R with Pfizer Intravenous Inhibitor Pf-00835231
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8dtq (Na: 4) - Crystal Structure of Staphylococcus Aureus PSK41 Cop
Other atoms:
Cl (3);
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8duz (Na: 1) - Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic
Other atoms:
Cl (1);
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8dv3 (Na: 2) - Crystal Structure of Human CD1B Presenting Phosphatidylinositol C34:1
Other atoms:
Cl (6);
I (2);
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8dv4 (Na: 3) - Crystal Structure of the BC8B Tcr-CD1B-Pi Complex
Other atoms:
Cl (3);
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8dvh (Na: 2) - Crystal Structure of Atp-Dependent Lon Protease From Bacillus Subtillis (Bslonba)
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8dw0 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Enzyme-Generated Abasic Site (Ap) Product and Crystallized with Sodium Acetate
Other atoms:
Fe (8);
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8dw4 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Abasic Site Product (Ap) Generated By the Enzyme in Crystals By Removal of Calcium
Other atoms:
Fe (4);
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8dwr (Na: 4) - Crystal Structure of the L333V Variant of Catalase-Peroxidase From Mycobacterium Tuberculosis
Other atoms:
Fe (4);
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8dye (Na: 2) - Crystal Structure of Human Sdha-SDHAF4 Assembly Intermediate
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8dyz (Na: 1) - Hen Lysozyme in Tetragonal Space Group at Ambient Temperature - Diffuse Scattering Dataset
Other atoms:
Cl (3);
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8dz7 (Na: 1) - Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset
Other atoms:
Cl (1);
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8e3k (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg)
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8e3t (Na: 2) - Gallium-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Other atoms:
Fe (30);
Mo (2);
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8e3u (Na: 2) - Nickel-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Other atoms:
Fe (30);
Mo (2);
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8e4f (Na: 3) - Crystal Structure of Dihydrofolate Reductase (Dhfr) From the Filarial Nematode W. Bancrofti in Complex with Nadph and Folate
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8e5c (Na: 6) - Crystal Structure of Sars Cov-2 Mpro Mutant L50F with Nirmatrelvir Captured in Two Conformational States
Other atoms:
Cl (4);
F (6);
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8e5i (Na: 1) - Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp.
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8e5s (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wt in An Occluded State
Other atoms:
Cl (1);
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8e5v (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wtsoak in An Occluded State
Other atoms:
Cl (1);
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8e5y (Na: 1) - Human Pu.1 Ets-Domain Bound to D(Aataagcggaagtggg) Acetate Free at pH 5.4
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8e62 (Na: 2) - Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid
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8e75 (Na: 1) - Crystal Structure of PCRYO_0616, the Aminotransferase Required to Synthesize Udp-N-Acetyl-3-Amino-D-Glucosaminuronic Acid (Udp- GLCNAC3NA)
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8e77 (Na: 2) - Rystal Structure of PCRYO_0616, the Aminotransferase Required to Synthesize Udp-N-Acetyl-3-Amino-D-Glucosaminuronic Acid (Udp- GLCNAC3NA), Incomplete with Its External Aldimine Reaction Intermediate
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8e7t (Na: 5) - Crystal Structure of Middle East Respiratory Syndrome Coronavirus (Mers-Cov) 3CL Protease Inactive Mutant C148A
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8e9a (Na: 12) - Crystal Structure of Asfvpolx in Complex with 10-23 Dnazyme and Mg
Other atoms:
Mg (6);
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8ed8 (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence of PIP2 and Pregs, State 1
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8ed9 (Na: 1) - Cryo-Em Structure of TRPM3 Ion Channel in the Presence with PIP2 and Pregs, State 2
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8efg (Na: 1) - Crystal Structure of Human TATDN1 Bound to Damp and Two Zinc Ions
Other atoms:
Zn (3);
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8ehe (Na: 1) - Structure of Tannerella Forsythia Potempin C in Complex with Mirolase
Other atoms:
Ca (6);
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8ek3 (Na: 1) - Human Pu.1 Ets-Domain (165-270) Q226E Mutant Bound to D(Aataagcggaatgggg)
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8ekv (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggatgtggg)
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8ekz (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataaggagaagtagg)
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8elk (Na: 1) - Hras R97F Crystal Form 1
Other atoms:
Ca (2);
Mg (2);
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8ell (Na: 2) - Apo Human Biliverdin Reductase Beta (Cryogenic)
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8elm (Na: 1) - Apo Human Biliverdin Reductase Beta (293K)
Page generated: Sat Aug 23 06:31:58 2025
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