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Sodium in PDB 8e5i: Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp.

Protein crystallography data

The structure of Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp., PDB code: 8e5i was solved by R.L.Frkic, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.65 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.298, 95.298, 87.602, 90, 90, 90
R / Rfree (%) 16.1 / 19.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp. (pdb code 8e5i). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp., PDB code: 8e5i:

Sodium binding site 1 out of 1 in 8e5i

Go back to Sodium Binding Sites List in 8e5i
Sodium binding site 1 out of 1 in the Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:26.5
occ:1.00
O A:HOH663 3.2 38.7 1.0
N A:GLU143 3.2 27.8 1.0
CA A:ARG142 3.9 28.8 1.0
CB A:GLU143 4.0 28.6 1.0
C A:ARG142 4.0 26.1 1.0
CG A:ARG142 4.1 50.3 1.0
CA A:GLU143 4.2 23.5 1.0
CB A:ALA121 4.3 26.4 1.0
CB A:ARG142 4.5 32.2 1.0
O A:GLU143 4.5 29.4 1.0
O A:PRO141 4.8 26.5 1.0
C A:GLU143 4.9 30.1 1.0

Reference:

R.L.Frkic, C.J.Jackson. Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp. To Be Published.
Page generated: Mon Aug 18 13:59:45 2025

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