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Sodium in PDB, part 261 (files: 10401-10440), PDB 7rcg-7rxv

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 10401-10440 (PDB 7rcg-7rxv).
  1. 7rcg (Na: 5) - I-ONUI_E-HPD1-F Final Stage Reengineered Variant of I-Onui
    Other atoms: Ca (2); Cl (3);
  2. 7rcl (Na: 4) - Crystal Structure of Adp-Bound Galactokinase
    Other atoms: Mg (4);
  3. 7rcm (Na: 2) - Crystal Structure of Adp-Bound Galactokinase
    Other atoms: Mg (2);
  4. 7rcp (Na: 6) - Gltph Mutant (S279E/D405N) in Complex with Aspartate and Sodium Ions
  5. 7rec (Na: 1) - Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc
    Other atoms: Cl (12);
  6. 7rey (Na: 2) - Mycobacterium Abscessus Trna Methyltransferase in Apo Form
  7. 7rg8 (Na: 4) - Crystal Structure of A Stable Heparanase Mutant
  8. 7rga (Na: 14) - Crystal Structure of NANOCLAMP3:Vhh in Complex with Mtx
  9. 7rhs (Na: 1) - Cryo-Em Structure of Apo-State of Human CNGA3/CNGB3 Channel
  10. 7ris (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Phosphate
    Other atoms: Ca (1);
  11. 7riz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound 2-Hydroxyquinoline
    Other atoms: Ca (1);
  12. 7rj9 (Na: 2) - Crystal Structure of the Vitronectin Hemopexin-Like Domain Binding Calcium
    Other atoms: Cl (2); Ca (2);
  13. 7rji (Na: 1) - Bthtx-II Variant B, From Bothrops Jararacussu Venom, Complexed with Stearic Acid
  14. 7rjo (Na: 1) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with Hnrnpk
  15. 7rjp (Na: 8) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with Shmt
    Other atoms: Cl (4);
  16. 7rjq (Na: 5) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with ILF3
    Other atoms: Cl (3);
  17. 7rjr (Na: 1) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1
  18. 7rlr (Na: 2) - Crystal Structure of K83A Mutant of Class D Beta-Lactamase From Clostridium Difficile 630
    Other atoms: Cl (7);
  19. 7rm3 (Na: 2) - Antibody 2E10.E9 in Complex with P. Vivax Csp Peptide Angagnqpgangagnqpgangaggqaa
  20. 7rm5 (Na: 1) - Microed Structure of the Human Adenosine Receptor at 2.8A
  21. 7rma (Na: 1) - Structure of the Fourth Uim (Ubiquitin Interacting Motif) of ANKRD13D in Complex with A High Affinity Ubv (Ubiquitin Variant)
  22. 7rnp (Na: 4) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9_H275E with 4-Cl-Trp Non-Covalently Bound
    Other atoms: Cl (2);
  23. 7rnq (Na: 4) - Holo Structure of Engineered Trpb, 2B9-H275E, From Pyrococcus Furiosus in the Extended-Open Conformation
  24. 7rof (Na: 4) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9-H275E with L-Trp Non-Covalently Bound
  25. 7roj (Na: 1) - Amyloid-Related Segment of Alphab-Crystallin Residues 90-100 with G95W Mutation
    Other atoms: F (12);
  26. 7roo (Na: 1) - Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide
    Other atoms: Mg (2); Ca (10); Br (4);
  27. 7rph (Na: 3) - Cryo-Em Structure of Murine Dispatched 'R' Conformation
  28. 7rpi (Na: 2) - Cryo-Em Structure of Murine Dispatched 'T' Conformation
  29. 7rpk (Na: 2) - Cryo-Em Structure of Murine Dispatched in Complex with Sonic Hedgehog
    Other atoms: Ca (2); Zn (1);
  30. 7rqu (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 4 Degrees Celsius, in A Closed State, Class I
  31. 7rqv (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 4 Degrees Celsius, in An Intermediate-Closed State, Class II
  32. 7rqx (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 25 Degrees Celsius, in An Intermediate-Open State, Class A
  33. 7rrp (Na: 72) - Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector
    Other atoms: Zn (206);
  34. 7rsj (Na: 3) - Structure of the VPS34 Kinase Domain with Compound 14
  35. 7rsv (Na: 5) - Structure of the VPS34 Kinase Domain with Compound 5
  36. 7rtm (Na: 2) - Cryo-Em Structure of the Sodium-Driven Chloride/Bicarbonate Exchanger Ndcbe (SLC4A8)
  37. 7rtr (Na: 4) - Ylq-SG3 Tcr in Complex with Sars-Cov-2 Spike-Derived Peptide S269-277 (Ylqprtfll) Presented By Hla-A*02:01
  38. 7rva (Na: 1) - Updated Crystal Structure of Replication Initiator Protein REPE54.
    Other atoms: Mg (2);
  39. 7rvi (Na: 1) - Segment From Naked Mole Rat (Elk T174S) Prion Protein 168-176 Qynnqnsfv
    Other atoms: As (1);
  40. 7rxv (Na: 2) - Human Methionine Adenosyltransferase 2A Bound to Methylthioadenosine, Malonate (Mla) and MGF3
    Other atoms: F (3); K (1); Mg (2);
Page generated: Tue Feb 25 11:41:09 2025

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