Sodium in PDB, part 261 (files: 10401-10440),
PDB 7rc3-7rsv
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10401-10440 (PDB 7rc3-7rsv).
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7rc3 (Na: 2) - Aeronamide N-Methyltransferase, Aere (Y137F)
Other atoms:
Ca (1);
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7rc4 (Na: 2) - Aeronamide N-Methyltransferase, Aere (D141A)
Other atoms:
Ca (1);
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7rc6 (Na: 1) - Aeronamide N-Methyltransferase, Aere, Bound to Modified Peptide Substrate, Aera-Dl,34
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7rce (Na: 1) - Third Stage Reengineered Variant of I-Onui with Specificity Enhancing Substitutions
Other atoms:
Ca (3);
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7rcf (Na: 1) - Fourth Stage Reengineered Variant of I-Onui with Stability Enhancing Substitutions
Other atoms:
Cl (1);
Ca (3);
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7rcg (Na: 5) - I-ONUI_E-HPD1-F Final Stage Reengineered Variant of I-Onui
Other atoms:
Ca (2);
Cl (3);
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7rcl (Na: 4) - Crystal Structure of Adp-Bound Galactokinase
Other atoms:
Mg (4);
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7rcm (Na: 2) - Crystal Structure of Adp-Bound Galactokinase
Other atoms:
Mg (2);
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7rcp (Na: 6) - Gltph Mutant (S279E/D405N) in Complex with Aspartate and Sodium Ions
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7rec (Na: 1) - Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc
Other atoms:
Cl (12);
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7rey (Na: 2) - Mycobacterium Abscessus Trna Methyltransferase in Apo Form
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7rg8 (Na: 4) - Crystal Structure of A Stable Heparanase Mutant
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7rga (Na: 14) - Crystal Structure of NANOCLAMP3:Vhh in Complex with Mtx
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7rhs (Na: 1) - Cryo-Em Structure of Apo-State of Human CNGA3/CNGB3 Channel
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7ris (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Phosphate
Other atoms:
Ca (1);
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7riz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound 2-Hydroxyquinoline
Other atoms:
Ca (1);
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7rj9 (Na: 2) - Crystal Structure of the Vitronectin Hemopexin-Like Domain Binding Calcium
Other atoms:
Cl (2);
Ca (2);
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7rji (Na: 1) - Bthtx-II Variant B, From Bothrops Jararacussu Venom, Complexed with Stearic Acid
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7rjo (Na: 1) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with Hnrnpk
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7rjp (Na: 8) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with Shmt
Other atoms:
Cl (4);
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7rjq (Na: 5) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with ILF3
Other atoms:
Cl (3);
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7rjr (Na: 1) - Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1
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7rlr (Na: 2) - Crystal Structure of K83A Mutant of Class D Beta-Lactamase From Clostridium Difficile 630
Other atoms:
Cl (7);
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7rm3 (Na: 2) - Antibody 2E10.E9 in Complex with P. Vivax Csp Peptide Angagnqpgangagnqpgangaggqaa
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7rm5 (Na: 1) - Microed Structure of the Human Adenosine Receptor at 2.8A
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7rma (Na: 1) - Structure of the Fourth Uim (Ubiquitin Interacting Motif) of ANKRD13D in Complex with A High Affinity Ubv (Ubiquitin Variant)
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7rnp (Na: 4) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9_H275E with 4-Cl-Trp Non-Covalently Bound
Other atoms:
Cl (2);
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7rnq (Na: 4) - Holo Structure of Engineered Trpb, 2B9-H275E, From Pyrococcus Furiosus in the Extended-Open Conformation
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7rof (Na: 4) - Engineered Tryptophan Synthase B-Subunit From Pyrococcus Furiosus, PFTRPB2B9-H275E with L-Trp Non-Covalently Bound
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7roj (Na: 1) - Amyloid-Related Segment of Alphab-Crystallin Residues 90-100 with G95W Mutation
Other atoms:
F (12);
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7roo (Na: 1) - Crystal Structure of Friedel-Crafts Alkylating Enzyme Cylk From Cylindospermum Licheniforme with Bromide
Other atoms:
Mg (2);
Ca (10);
Br (4);
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7rph (Na: 3) - Cryo-Em Structure of Murine Dispatched 'R' Conformation
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7rpi (Na: 2) - Cryo-Em Structure of Murine Dispatched 'T' Conformation
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7rpk (Na: 2) - Cryo-Em Structure of Murine Dispatched in Complex with Sonic Hedgehog
Other atoms:
Ca (2);
Zn (1);
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7rqu (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 4 Degrees Celsius, in A Closed State, Class I
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7rqv (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 4 Degrees Celsius, in An Intermediate-Closed State, Class II
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7rqx (Na: 2) - Cryo-Em Structure of the Full-Length TRPV1 with Rtx at 25 Degrees Celsius, in An Intermediate-Open State, Class A
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7rrp (Na: 72) - Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector
Other atoms:
Zn (206);
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7rsj (Na: 3) - Structure of the VPS34 Kinase Domain with Compound 14
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7rsv (Na: 5) - Structure of the VPS34 Kinase Domain with Compound 5
Page generated: Mon Aug 18 11:37:59 2025
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