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Sodium in PDB 7rjr: Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1

Protein crystallography data

The structure of Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1, PDB code: 7rjr was solved by E.Fedorov, K.Islam, A.Ghosh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.01 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.321, 43.796, 78.438, 90, 90, 90
R / Rfree (%) 17.1 / 20.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1 (pdb code 7rjr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1, PDB code: 7rjr:

Sodium binding site 1 out of 1 in 7rjr

Go back to Sodium Binding Sites List in 7rjr
Sodium binding site 1 out of 1 in the Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Bromodomain Containing Protein 4 (BRD4) in Complex with BCLTF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:23.9
occ:1.00
N A:LYS57 3.1 13.8 1.0
CB A:LYS57 3.6 14.9 1.0
CG A:LYS57 3.7 11.9 1.0
O A:LYS57 3.7 14.7 1.0
CA A:LYS57 3.8 14.4 1.0
CA A:PRO56 3.8 16.0 1.0
C A:PRO56 3.9 14.1 1.0
C A:LYS57 4.2 14.7 1.0
O A:LYS55 4.4 14.3 1.0
CB A:PRO56 4.6 19.0 1.0
CD A:LYS57 5.0 13.9 1.0
N A:PRO56 5.0 16.7 1.0

Reference:

S.Wagner, E.Fedorov, B.Sudhamalla, H.N.Jnawali, R.Debiec, A.Ghosh, K.Islam. Uncovering the Bromodomain Interactome Using Site-Specific Azide-Acetyllysine Photochemistry, Proteomic Profiling and Structural Characterization To Be Published.
Page generated: Mon Aug 18 11:40:55 2025

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