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Sodium in PDB, part 247 (files: 9841-9880), PDB 7lcz-7lsu

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9841-9880 (PDB 7lcz-7lsu).
  1. 7lcz (Na: 5) - Crystal Structure of the Arm Domain From Drosophila SARM1 in Complex with Nmn
  2. 7ld8 (Na: 1) - Crystal Structure of Putative Non-Heme Bromoperoxidase Bpoc From Mycobacterium Tuberculosis H37RV
  3. 7ld9 (Na: 1) - Structure of Human GGT1 in Complex with Abba
    Other atoms: Cl (2);
  4. 7lfi (Na: 2) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide Refined at 1.70 Angstroms Resolution
  5. 7lfj (Na: 1) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Ala Mutant, Refined at 1.70 Angstroms Resolution
  6. 7lfk (Na: 6) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Thr Mutant, Refined at 1.60 Angstroms Resolution
  7. 7lfm (Na: 1) - Model of Mhc Class Ib H2-M3 with Mouse ND1 N-Terminal Heptapeptide, Val Mutant, Triclinic Cell, Refined at 1.60 Angstroms Resolution
  8. 7lfy (Na: 3) - Cryo-Em Structure of Human Cgmp-Bound Open CNGA1 Channel in Na+
  9. 7lgd (Na: 1) - Hla-B*07:02 in Complex with Sars-Cov-2 Nucleocapsid Peptide N105-113
    Other atoms: Cl (5);
  10. 7lgp (Na: 3) - Dape Enzyme From Shigella Flexneri
    Other atoms: Cl (15); Zn (2);
  11. 7lgt (Na: 4) - Hla-B*07:02 in Complex with 229E-Derived Coronavirus Nucleocapsid Peptide N75-83
    Other atoms: K (12); Cl (9); Zn (11); Br (1);
  12. 7lh8 (Na: 1) - Crystal Structure of the First Bromodomain of Human BRD4 in Complex with Inhibitor Jj-II-131
  13. 7lhx (Na: 1) - Human U1A Protein with F37M and F77M Mutations For Improved Phasing
  14. 7li0 (Na: 4) - Crystal Structure of Apo Moraxella Catarrhalis Ferric Binding Protein A in An Open Conformation
  15. 7lia (Na: 2) - 5-Ht Bound Serotonin Transporter Reconstituted in Lipid Nanodisc in Presence of Nacl in Outward Facing Conformation
    Other atoms: Cl (1);
  16. 7lj2 (Na: 2) - Structure of Exo-L-Galactose-6-Sulfatase BUS1_11 From Bacteroides Uniformis in Complex with Neoporphyrabiose
    Other atoms: Ca (2);
  17. 7lk8 (Na: 3) - Crystal Structure of Kpc-2 T215P Mutant
  18. 7llp (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Crystal Structure, Dataset 1
    Other atoms: Cl (1);
  19. 7lm5 (Na: 1) - Crystal Structure of the Zn(II)-Bound Adcaii H65A Mutant Variant of Streptococcus Pneumoniae
    Other atoms: Zn (11); Cl (2);
  20. 7ln8 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Crystal Structure, Dataset 3
    Other atoms: Cl (1);
  21. 7ln9 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 1
    Other atoms: Cl (2);
  22. 7lnp (Na: 10) - Structure of the Exo-Alpha-L-Galactosidase BPGH29 (D264N Mutant) From Bacteroides Plebeius in Complex with Paranitrophenyl-Alpha-L- Galactopyranoside
    Other atoms: Cl (2); Ni (9); Ca (4);
  23. 7loq (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 2
    Other atoms: Cl (2);
  24. 7lor (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 3
    Other atoms: Cl (2);
  25. 7lp6 (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 2 (Merged)
    Other atoms: Cl (2);
  26. 7lp9 (Na: 2) - Cryo-Em Structure of Full-Length TRPV1 at 4 Degrees Celsius
  27. 7lpa (Na: 2) - Cryo-Em Structure of Full-Length TRPV1 with Capsaicin at 4 Degrees Celsius
  28. 7lpf (Na: 1) - The Internal Aldimine Form of the Wild-Type Salmonella Typhimurium Tryptophan Synthase in Complex with Inhibitor N-(4'- Trifluoromethoxybenzenesulfonyl)-2-Amino-1-Ethylphosphate (F9F) at the Enzyme Alpha-Site and Sodium Ion at the Metal Coordination Site at 1.10 Angstrom Resolution
    Other atoms: F (3);
  29. 7lpl (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Dataset 3 (Merged)
    Other atoms: Cl (2);
  30. 7lpm (Na: 2) - X-Ray Radiation Damage Series on Lysozyme at 277K, Multi-Conformer Model, Crystal 2
    Other atoms: Cl (2);
  31. 7lqj (Na: 2) - Crystal Structure of Leut Bound to L-Alanine
  32. 7lqk (Na: 2) - Crystal Structure of the R375A Mutant of Leut
  33. 7lql (Na: 2) - Crystal Structure of the R375D Mutant of Leut
  34. 7lqy (Na: 1) - Structure of Squirrel TRPV1 in Apo State
    Other atoms: Cl (1);
  35. 7lqz (Na: 1) - Structure of Squirrel TRPV1 in Complex with Rtx
  36. 7lr0 (Na: 1) - Structure of Squirrel TRPV1 in Complex with Capsaicin
  37. 7lrf (Na: 1) - Netrin-1 in Complex with Sos
    Other atoms: Cl (1); Ca (2);
  38. 7lsf (Na: 2) - Crystal Structure of the Human Neutralizing Antibody Fab Fragment T025 Bound to Tbev Ediii (Western Subtype)
  39. 7lst (Na: 1) - Ruminococcus Bromii AMY12-D392A with 63-A-D-Glucosyl-Maltotriosyl- Maltotriose
    Other atoms: Ca (1);
  40. 7lsu (Na: 1) - Ruminococcus Bromii AMY12-D392A with 63-A-D-Glucosyl-Maltotriose
    Other atoms: Ca (1);
Page generated: Sun Dec 15 11:41:59 2024

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