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Sodium in PDB 7hi9: Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant

Protein crystallography data

The structure of Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant, PDB code: 7hi9 was solved by J.A.Newman, A.E.Gavard, L.Sherestha, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.87 / 1.42
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 99.734, 99.734, 99.325, 90, 90, 120
R / Rfree (%) 19.8 / 22.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant (pdb code 7hi9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant, PDB code: 7hi9:

Sodium binding site 1 out of 1 in 7hi9

Go back to Sodium Binding Sites List in 7hi9
Sodium binding site 1 out of 1 in the Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:90.9
occ:1.00
N A:GLY154 3.6 63.4 1.0
CA A:GLY154 3.9 61.4 1.0
CA A:LEU152 4.0 62.7 1.0
CB A:LEU152 4.0 68.6 1.0
C A:LEU152 4.2 57.1 1.0
N A:ASN153 4.3 57.4 1.0
O A:LEU152 4.7 58.8 1.0
C A:ASN153 4.8 57.5 1.0
C A:GLY154 4.8 62.7 1.0
CA A:ASN153 5.0 56.8 1.0
O A:GLY154 5.0 65.9 1.0

Reference:

J.A.Newman, A.E.Gavard, L.Sherestha, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Pandda Analysis Group Deposition of Ground-State Model To Be Published.
Page generated: Thu Oct 31 22:56:04 2024

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