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Sodium in PDB, part 243 (files: 9681-9720), PDB 7ncp-8icn

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9681-9720 (PDB 7ncp-8icn).
  1. 7ncp (Na: 3) - Glutathione-S-Transferase Glig Mutant K127A
  2. 7ncv (Na: 2) - Crystal Structure of Reduced Glutaredoxin 2 From Chlamydomonas Reinhardtii
  3. 7ndh (Na: 1) - Crystal Structure of ZC3H12C Pin Domain
  4. 7ndi (Na: 3) - Crystal Structure of ZC3H12C Pin Domain with MG2+ Ion
    Other atoms: Mg (4);
  5. 7ndj (Na: 2) - Crystal Structure of ZC3H12C Pin-Ccch Zn Finger Domain with Rna Heptamer
    Other atoms: Zn (1);
  6. 7ndk (Na: 2) - Crystal Structure of ZC3H12C Pin Catalytic Mutant
  7. 7nea (Na: 3) - Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M3 Mutant).
    Other atoms: Cl (3);
  8. 7neb (Na: 1) - Crystal Structure of Branched-Chain Amino Acid Aminotransferase From Thermobaculum Terrenum (M4 Mutant)
  9. 7nei (Na: 2) - Novel Polyester Hydrolase Leipzig 7 (Phl-7)
  10. 7neu (Na: 1) - Inhibitor Complex with Thrombin Activatable Fibrinolysis Inhibitor (Tafia)
    Other atoms: Zn (1); Cl (1); F (1);
  11. 7nf5 (Na: 1) - Crystal Structure of Mg-132 Covalently Bound to the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 in Spacegroup C2.
    Other atoms: Cl (2);
  12. 7njf (Na: 1) - Hen Egg White Lysozyme (Hewl) Grown Inside Hare Serial Crystallography Chip
  13. 7nkf (Na: 1) - Hen Egg White Lysozyme (Hewl) Grown Inside (Not Centrifuged) Hare Serial Crystallography Chip.
  14. 7now (Na: 2) - Complex of Nucleoporin-98 and Nanobody MS98-27 Solved at 1.85A Resolution
  15. 7nq6 (Na: 3) - High Resolution Crystal Structure of C-Terminal Domain (Residues 715- 866) of Nucleoporin-98
    Other atoms: Cl (3);
  16. 7nqa (Na: 3) - Complex of Nucleoporin-98 and Nanobody MS98-27 Solved at 1.85A Resolution
  17. 7ntu (Na: 4) - X-Ray Structure of the Complex Between Human Alpha Thrombin and Two Duplex/Quadruplex Aptamers: NU172 and HD22_27MER
  18. 7nyj (Na: 1) - Structure of OBP1 From Varroa Destructor, Form P3<2>21
    Other atoms: Ca (2);
  19. 7nza (Na: 1) - Structure of OBP1 From Varroa Destructor, Form P2<1>
  20. 7o9j (Na: 3) - Crystal Structure of Dyp-Type Peroxidase From Dictyostelium Discoideum in Complex with An Activated Form of Oxygen
    Other atoms: Fe (2);
  21. 7ob0 (Na: 1) - Structure of Rslov D2 Variant
    Other atoms: Mg (1); Ca (2);
  22. 7obz (Na: 3) - Structure of Rslov D109G
    Other atoms: Cl (13);
  23. 7ogj (Na: 2) - Crystal Structure of Human METTL1 in Complex with Sah
  24. 7p18 (Na: 1) - Crystal Structure of 3-Ketosteroid DELTA1-Dehydrogenase From Sterolibacterium Denitrificans in Complex with 1,4-Androstadiene-3, 17-Dione
  25. 7rec (Na: 1) - Structure of THR354ASN, GLU355GLN, THR412ASN, ILE414MET, ILE464HIS, and PHE467MET Mutant Human Camkii Alpha Hub Bound to 5-Hdc
    Other atoms: Cl (12);
  26. 7rlr (Na: 2) - Crystal Structure of K83A Mutant of Class D Beta-Lactamase From Clostridium Difficile 630
    Other atoms: Cl (7);
  27. 7rrp (Na: 72) - Apoferritin Structure at 1.27 Angstrom Resolution Determined From A 300 Kv Titan Krios G3I Electron Microscope with FALCON4 Detector
    Other atoms: Zn (206);
  28. 8ica (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CACL2 (5 Millimolar)
    Other atoms: Ca (1);
  29. 8icb (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Artificial Mother Liquor
  30. 8icc (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna (No 5'-Phosphate)
  31. 8ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CDCL2 (1 Millimolar)
    Other atoms: Cd (2);
  32. 8icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (10 Millimolar) and MGCL2 (50 Millimolar)
  33. 8icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MGCL2 (5 Millimolar)
  34. 8ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MGCL2 (5 Millimolar)
  35. 8ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MGCL2 (5 Millimolar)
    Other atoms: Mg (1);
  36. 8icj (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MGCL2
  37. 8ick (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MGCL2 (5 Millimolar), and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  38. 8icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and NICL2 (5 Millimolar)
    Other atoms: Ni (2);
  39. 8icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Ammonium Sulfate (75 Millimolar)
  40. 8icn (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Atp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
Page generated: Sun Aug 22 09:13:11 2021

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