Sodium in PDB, part 243 (files: 9681-9720),
PDB 7grz-7jr1
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 9681-9720 (PDB 7grz-7jr1).
-
7grz (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-22
-
7gs0 (Na: 2) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-23
Other atoms:
Cl (1);
-
7gs1 (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-24
Other atoms:
Cl (1);
-
7gs2 (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-25
-
7gs3 (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-26
-
7gs4 (Na: 1) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Cpd-27
Other atoms:
Cl (1);
-
7hi9 (Na: 1) - Pandda Analysis Group Deposition of Ground-State Model of Human Brachyury G177D Variant
-
7ice (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
-
7icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
Other atoms:
Cd (2);
-
7icg (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
-
7ich (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
-
7ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
-
7icj (Na: 1) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
Other atoms:
Cu (1);
-
7ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
-
7icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
-
7icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
-
7icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
-
7ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
-
7icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
Other atoms:
Zn (2);
-
7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (1);
-
7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
Other atoms:
Zn (2);
-
7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
-
7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
Other atoms:
Zn (1);
-
7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
Other atoms:
Cd (1);
-
7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
-
7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
-
7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
-
7jgk (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K
Other atoms:
Ni (3);
-
7jgo (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K
Other atoms:
Ni (3);
-
7jgp (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate at 318K
Other atoms:
Ni (3);
-
7jgq (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K After One Heating/Cooling Cycle
Other atoms:
Ni (3);
-
7jhk (Na: 1) - Structure of Human Beta 1,3-N-Acetylglucosaminyltransferase 2 in Unliganded Form
Other atoms:
Cl (6);
-
7jhq (Na: 3) - Oxa-48 Bound By Compound 2.3
Other atoms:
Cl (2);
-
7jja (Na: 2) - Crystal Structure of the Zint-Like Domain of Streptococcus Pneumoniae Adca in the Apo Form
-
7jjb (Na: 6) - Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca
Other atoms:
Mg (1);
Zn (2);
-
7jky (Na: 1) - Bromodomain-Containing Protein 4 (BRD4) Bromodomain 1 (BD1) Complexed with YF3-126
-
7jlk (Na: 17) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV1 Scfv
Other atoms:
Cl (14);
-
7jln (Na: 1) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV9 Fab
-
7jmq (Na: 1) - The External Aldimine Form of the Mutant Beta-S377A Salmonella Thypi Tryptophan Synthase in Open Conformation Showing Dual Side Chain Conformations For the Residue Beta-Q114, Sodium Ion at the Metal Coordination Site, and F9 Inhibitor at the Alpha-Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
Other atoms:
Cs (2);
Cl (1);
F (3);
-
7jr1 (Na: 4) - Crystal Structure of the R64F Mutant of Bauhinia Bauhinioides Kallikrein Inhibitor Complexed with Bovine Trypsin
Page generated: Wed Nov 13 13:06:30 2024
|
