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Sodium in PDB, part 241 (files: 9601-9640), PDB 7f6t-7jsj

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 9601-9640 (PDB 7f6t-7jsj).
  1. 7f6t (Na: 2) - Crystal Structure of Metal-Citrate-Binding Mutant (Y221F) Protein (Mcta) of Abc Transporter in Apo State
    Other atoms: Cl (1);
  2. 7f6u (Na: 2) - Crystal Structure of Metal-Citrate-Binding Mutant (Y221A) Protein (Mcta) of Abc Transporter in Apo State
    Other atoms: As (1);
  3. 7faz (Na: 1) - Crystal Structure of the Sars-Cov-2 Main Protease in Complex with Y180
    Other atoms: F (2);
  4. 7gep (Na: 1) - Sulfite Reductase Hemoprotein in Complex with A Partially Oxidized Sulfide Species
    Other atoms: Fe (5);
  5. 7ice (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CACL2
  6. 7icf (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar) (Four-Day Soak)
    Other atoms: Cd (2);
  7. 7icg (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of CDCL2
  8. 7ich (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of COCL2
  9. 7ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CRCL3 (0.1 Millimolar)
  10. 7icj (Na: 1) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CUCL2 (0.1 Millimolar)
    Other atoms: Cu (1);
  11. 7ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of MGCL2
  12. 7icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar)
  13. 7icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (1.0 Millimolar)
  14. 7icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
  15. 7ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
    Other atoms: Zn (2);
  16. 7icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of ZNCL2 (0.01 Millimolar)
    Other atoms: Zn (2);
  17. 7icq (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
    Other atoms: Zn (1);
  18. 7icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
    Other atoms: Zn (2);
  19. 7ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2
  20. 7ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of ZNCL2 and MGCL2
    Other atoms: Zn (1);
  21. 7icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of CDCL2 (0.1 Millimolar)
    Other atoms: Cd (1);
  22. 7icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of MNCL2 (0.1 Millimolar) and in the Absence of Nacl
  23. 7jg3 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF103 Inhibitor
  24. 7jg4 (Na: 1) - Human Gar Transformylase in Complex with Gar Substrate and AGF131 Inhibitor
  25. 7jgk (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 100K
    Other atoms: Ni (3);
  26. 7jgo (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K
    Other atoms: Ni (3);
  27. 7jgp (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate at 318K
    Other atoms: Ni (3);
  28. 7jgq (Na: 1) - Crystal Structure of the Ni-Bound Human Heavy-Chain Variant 122H-Delta C-Star with 2,5-Furandihyrdoxamate Collected at 278K After One Heating/Cooling Cycle
    Other atoms: Ni (3);
  29. 7jhk (Na: 1) - Structure of Human Beta 1,3-N-Acetylglucosaminyltransferase 2 in Unliganded Form
    Other atoms: Cl (6);
  30. 7jhq (Na: 3) - Oxa-48 Bound By Compound 2.3
    Other atoms: Cl (2);
  31. 7jja (Na: 2) - Crystal Structure of the Zint-Like Domain of Streptococcus Pneumoniae Adca in the Apo Form
  32. 7jjb (Na: 6) - Crystal Structure of Zn(II)-Bound Zint-Like Domain of Streptococcus Pneumoniae Adca
    Other atoms: Mg (1); Zn (2);
  33. 7jky (Na: 1) - Bromodomain-Containing Protein 4 (BRD4) Bromodomain 1 (BD1) Complexed with YF3-126
  34. 7jlk (Na: 17) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV1 Scfv
    Other atoms: Cl (14);
  35. 7jln (Na: 1) - Crystal Structure of GLVRC01 Fab in Complex with Anti-Idiotype IV9 Fab
  36. 7jmq (Na: 1) - The External Aldimine Form of the Mutant Beta-S377A Salmonella Thypi Tryptophan Synthase in Open Conformation Showing Dual Side Chain Conformations For the Residue Beta-Q114, Sodium Ion at the Metal Coordination Site, and F9 Inhibitor at the Alpha-Site. One of the Beta-Q114 Rotamer Conformations Allows A Hydrogen Bond to Form with the Plp Oxygen at the Position 3 in the Ring
    Other atoms: Cs (2); Cl (1); F (3);
  37. 7jr1 (Na: 4) - Crystal Structure of the R64F Mutant of Bauhinia Bauhinioides Kallikrein Inhibitor Complexed with Bovine Trypsin
  38. 7jr6 (Na: 2) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
    Other atoms: Mg (2); F (2);
  39. 7jr8 (Na: 3) - H-Pdgs Complexed with A 2-Phenylimidazo[1,2-A]Pyridine-6-Carboxamide Inhibitors
    Other atoms: Mg (2); Cl (1);
  40. 7jsj (Na: 4) - Structure of the Nact-PF2 Complex
Page generated: Fri Dec 24 09:55:42 2021

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