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Sodium in PDB, part 222 (files: 8841-8880), PDB 6tbk-6tos

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 8841-8880 (PDB 6tbk-6tos).
  1. 6tbk (Na: 32) - Structure of A Beta Galactosidase with Inhibitor
  2. 6tbn (Na: 1) - Crystal Structure of CIAO1-CIAO2B Cia Core Complex
  3. 6tdp (Na: 1) - Crystal Structure of the Disulfide Engineered Hla-A0201 Molecule in Complex with One Gl Dipeptide in the A Pocket.
  4. 6tdr (Na: 3) - Crystal Structure of the Disulfide Engineered Hla-A0201 Molecule Devoid of Peptide (Annealed)
  5. 6tds (Na: 15) - Crystal Structure of the Disulfide Engineered Hla-A0201 Molecule Without Peptide Bound After Nacl Wash
    Other atoms: Cl (8);
  6. 6tdt (Na: 2) - Thrombin in Complex with A D-Diphe-Pro-P-Pyridine Derivative
  7. 6ter (Na: 6) - Crystal Structure of A Galactokinase From Bifidobacterium Infantis in Complex with Galactose
    Other atoms: Cl (3);
  8. 6tf0 (Na: 2) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Nicotinamide Adenine Dinucleotide, Reduced (Nadh)
    Other atoms: Mg (8); Br (1);
  9. 6tf1 (Na: 1) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Adenosine Diphosphate (Adp)
    Other atoms: Mg (7);
  10. 6tf2 (Na: 1) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Adenosine 5-Triphosphate (Atp)
    Other atoms: Mg (5); Br (2);
  11. 6tf3 (Na: 4) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Cordycepin 5-Triphosphate (3-Datp)
    Other atoms: Mg (4);
  12. 6tfe (Na: 4) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with N6-Methyl-Adenosine-5'-Triphosphate (M6ATP)
    Other atoms: Mg (10); Br (2);
  13. 6tff (Na: 1) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Nicotinamide Adenine Dinucleotide (Nad+)
    Other atoms: Br (2); Mg (5);
  14. 6tfg (Na: 5) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Adenosine 3-Phosphate 5-Phosphosulfate (Apps)
    Other atoms: Mg (6);
  15. 6tfh (Na: 1) - Crystal Structure of the Adp-Binding Domain of the Nad+ Riboswitch with Nicotinamide Adenine Dinucleotide, Reduced (Nadh); Soaking with Manganese(II) (MN2+)
    Other atoms: Mn (9); Br (1);
  16. 6tfp (Na: 2) - Btk in Complex with LOU064, A Potent and Highly Selective Covalent Inhibitor
    Other atoms: F (10);
  17. 6tg1 (Na: 1) - Crystal Structure of Egfr T790M/V948R in Complex with Covalent Pyrrolopyrimidine 21B
  18. 6tgh (Na: 3) - Shmt From Streptococcus Thermophilus TYR55THR Variant in Complex with D-Serine Both As External Aldimine and As Non-Covalent Complex
  19. 6thv (Na: 1) - X-Ray Structure of the Danio Rerio Histone Deacetylase 6 (HDAC6; Catalytic Domain 2) in Complex with Tubastatin A
    Other atoms: K (3); Zn (1);
  20. 6ti1 (Na: 1) - Shmt From Streptococcus Thermophilus TYR55SER Variant in Complex with Plp/L-Threonine/LYS230 Gem Diamine Complex
  21. 6ti3 (Na: 1) - Apo-Shmt From Streptococcus Thermophilus TYR55SER Variant in Complex with D-Threonine
  22. 6tj9 (Na: 2) - Escherichia Coli Transketolase in Complex with Cofactor Analog 2'- Methoxythiamine and Substrate Xylulose 5-Phosphate
    Other atoms: Ca (2);
  23. 6tk1 (Na: 1) - Femtosecond to Millisecond Structural Changes in A Light-Driven Sodium Pump: 20MS Structure of KR2 with Extrapolated, Light and Dark Datasets
  24. 6tk2 (Na: 1) - Femtosecond to Millisecond Structural Changes in A Light-Driven Sodium Pump: 1MS Structure of KR2 with Extrapolated, Light and Dark Datasets
  25. 6tkg (Na: 1) - Tsetse Thrombin Inhibitor in Complex with Human Alpha-Thrombin - Orthorhombic Form at 12KEV
  26. 6tkh (Na: 1) - Tsetse Thrombin Inhibitor in Complex with Human Alpha-Thrombin - Orthorhombic Form at 7KEV
  27. 6tki (Na: 1) - Tsetse Thrombin Inhibitor in Complex with Human Alpha-Thrombin - Tetragonal Form at 12.7KEV
  28. 6tkl (Na: 1) - Non-Cleavable Tsetse Thrombin Inhibitor in Complex with Human Alpha- Thrombin
  29. 6tlb (Na: 3) - Plasmodium Falciparum Lipocalin (PF3D7_0925900)
  30. 6tll (Na: 1) - Human CK2 Kinase Alpha Subunit in Complex with the Atp-Competitive Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbbt)
    Other atoms: Br (20); Cl (2);
  31. 6tlo (Na: 1) - Human CK2 Kinase Alpha Subunit in Complex with the Atp-Competitive Inhibitor 4,5,6-Tribromobenzotriazole
    Other atoms: Br (9); Cl (2);
  32. 6tlr (Na: 1) - Human CK2 Kinase Alpha Subunit in Complex with the Atp-Competitive Inhibitor 4,7-Dibromobenzotriazole
    Other atoms: Br (6); Cl (1);
  33. 6tls (Na: 1) - Human CK2 Kinase Alpha Subunit in Complex with the Atp-Competitive Inhibitor 4,6-Dibromobenzotriazole
    Other atoms: Br (6); Cl (6);
  34. 6tlv (Na: 1) - Human CK2 Kinase Alpha Subunit in Complex with the Atp-Competitive Inhibitor 5-Bromobenzotriazole
    Other atoms: Br (3); Cl (3);
  35. 6tmy (Na: 12) - Crystal Structure of Isoform Cbd of the Basic Phospholipase A2 Subunit of Crotoxin From Crotalus Durissus Terrificus
    Other atoms: Cl (7);
  36. 6tn6 (Na: 1) - X-Ray Structure of the Endo-Beta-1,4-Mannanase From Thermotoga Petrophila
    Other atoms: Cl (1);
  37. 6to7 (Na: 2) - Crystal Structure of the Orexin-1 Receptor in Complex with Suvorexant at 2.29 A Resolution
    Other atoms: Cl (2);
  38. 6tod (Na: 2) - Crystal Structure of the Orexin-1 Receptor in Complex with Empa
  39. 6top (Na: 4) - Structure of the Pore C-Terminal Domain, A Protein of T9SS From Porphyromonas Gingivalis
  40. 6tos (Na: 1) - Crystal Structure of the Orexin-1 Receptor in Complex with GSK1059865
    Other atoms: F (2); Br (2);
Page generated: Sat Sep 25 14:51:58 2021

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