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Sodium in PDB, part 182 (files: 7241-7280), PDB 5x7g-5y3e

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7241-7280 (PDB 5x7g-5y3e).
  1. 5x7g (Na: 1) - Crystal Structure of Paenibacillus Sp. 598K Cycloisomaltooligosaccharide Glucanotransferase
    Other atoms: Ca (2);
  2. 5x7h (Na: 1) - Crystal Structure of Paenibacillus Sp. 598K Cycloisomaltooligosaccharide Glucanotransferase Complexed with Cycloisomaltoheptaose
    Other atoms: Ca (2);
  3. 5x8f (Na: 33) - Ternary Complex Structure of A Double Mutant I454RA456K of O- Succinylbenzoate Coa Synthetase (Mene) From Bacillus Subtilis Bound with Amp and Its Product Analogue Osb-Ncoa at 1.76 Angstrom
    Other atoms: Mg (27); Ca (3);
  4. 5x8g (Na: 5) - Binary Complex Structure of A Double Mutant I454RA456K of O- Succinylbenzoate Coa Synthetase (Mene) From Bacillus Subtilis Bound with Its Product Analogue Osb-Ncoa at 1.90 Angstrom
    Other atoms: Mg (9); Ca (8);
  5. 5x8k (Na: 10) - V158T Mutant of Thermus Thermophilus HB8 Thymidylate Kinase
    Other atoms: Cl (2);
  6. 5x8v (Na: 4) - Y92H Mutant of Thermus Thermophilus HB8 Thymidylate Kinase
    Other atoms: Cl (2);
  7. 5xa7 (Na: 1) - Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-2CA2+ Crystals
    Other atoms: Ca (2);
  8. 5xab (Na: 1) - Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E2(Tg) Crystals
  9. 5xao (Na: 4) - Crystal Structure of Phaeospaeria Nodrum Fructosyl Peptide Oxidase Mutant ASN56ALA in Complexes with Sodium and Chloride Ions
    Other atoms: Cl (5);
  10. 5xar (Na: 4) - Structural Insights Into the Elevator-Like Mechanism of the Sodium/Citrate Symporter Cits
  11. 5xas (Na: 2) - Structural Insights Into the Elevator-Like Mechanism of the Sodium/Citrate Symporter Cits
  12. 5xat (Na: 3) - Structural Insights Into the Elevator-Like Mechanism of the Sodium/Citrate Symporter Cits
  13. 5xc0 (Na: 2) - Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27
    Other atoms: Mg (2);
  14. 5xc1 (Na: 2) - Crystal Structure of the Complex of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 with S-1,2- Propanediol
    Other atoms: Mg (2);
  15. 5xdf (Na: 2) - Homoserine Dehydrogenase From Thermus Thermophilus HB8 Complexed with Hse
  16. 5xdq (Na: 4) - Bovine Heart Cytochrome C Oxidase in the Fully Oxidized State with pH 7.3 at 1.77 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  17. 5xdx (Na: 4) - Bovine Heart Cytochrome C Oxidase in the Reduced State with pH 7.3 at 1.99 Angstrom Resolution
    Other atoms: Mg (2); Zn (2); Fe (4); Cu (6);
  18. 5xdz (Na: 2) - Crystal Structure of Zebrafish SNX25 Px Domain
    Other atoms: Cl (1);
  19. 5xh6 (Na: 5) - Crystal Structure of the Acidaminococcus Sp. BV3L6 CPF1 Rvr Variant in Complex with Crrna and Target Dna (Tata Pam)
    Other atoms: Cl (1);
  20. 5xh7 (Na: 5) - Crystal Structure of the Acidaminococcus Sp. BV3L6 CPF1 Rr Variant in Complex with Crrna and Target Dna (Tcca Pam)
    Other atoms: Cl (1);
  21. 5xh8 (Na: 1) - Aspergillus Kawachii Beta-Fructofuranosidase Complexed with Glycerol
  22. 5xh9 (Na: 1) - Aspergillus Kawachii Beta-Fructofuranosidase
  23. 5xha (Na: 1) - Aspergillus Kawachii Beta-Fructofuranosidase Complexed with Fructose
  24. 5xlj (Na: 1) - Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432
    Other atoms: Cl (5);
  25. 5xm5 (Na: 5) - Crystal Structure of Zinc Binding Protein Zint at 1.49 Angstrom From E. Coli
    Other atoms: Zn (6);
  26. 5xnp (Na: 2) - Crystal Structures of Human SALM5 in Complex with Human Ptpdelta
    Other atoms: Cl (12); Ca (12);
  27. 5xnq (Na: 3) - Crystal Structures of Human SALM5
    Other atoms: Cl (2); Ca (4);
  28. 5xpe (Na: 1) - Neutron Structure of the T26H Mutant of T4 Lysozyme
    Other atoms: Cl (4);
  29. 5xpf (Na: 3) - High-Resolution X-Ray Structure of the T26H Mutant of T4 Lysozyme
    Other atoms: Cl (6);
  30. 5xu8 (Na: 5) - Crystal Structure of Human USP2 in Complex with Ubiquitin and 6- Thioguanine
    Other atoms: Cl (5); Zn (1);
  31. 5xus (Na: 3) - Crystal Structure of Lachnospiraceae Bacterium ND2006 CPF1 in Complex with Crrna and Target Dna (Ttta Pam)
    Other atoms: Mg (2);
  32. 5xut (Na: 1) - Crystal Structure of Lachnospiraceae Bacterium ND2006 CPF1 in Complex with Crrna and Target Dna (Tcta Pam)
    Other atoms: Mg (1);
  33. 5xuu (Na: 1) - Crystal Structure of Lachnospiraceae Bacterium ND2006 CPF1 in Complex with Crrna and Target Dna (Tcca Pam)
    Other atoms: Mg (1);
  34. 5xuz (Na: 3) - Crystal Structure of Lachnospiraceae Bacterium ND2006 CPF1 in Complex with Crrna and Target Dna (Ccca Pam)
    Other atoms: Mg (2);
  35. 5xvd (Na: 2) - [Nife]-Hydrogenase (Hyb-Type) From Citrobacter Sp. S-77 in An Air- Oxidized Condition
    Other atoms: Ni (2); Mg (2); Fe (32);
  36. 5xwz (Na: 4) - Crystal Structure of A Lactonase From Cladophialophora Bantiana
  37. 5xxs (Na: 1) - Crystal Structure of Native Ribt From Bacillus Subtilis
  38. 5y07 (Na: 2) - Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis with Prpp.
    Other atoms: Mg (2);
  39. 5y0l (Na: 2) - Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G/H130Y Muntant
  40. 5y3e (Na: 5) - Crystal Structure of Sars Coronavirus Papain-Like Protease in Complex with Glycerol
    Other atoms: Zn (1);
Page generated: Tue Dec 1 10:45:11 2020

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