Sodium in PDB 5xlj: Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432

The structure of Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432, PDB code: 5xlj was solved by S.Y.Cho, W.S.Song, H.J.Hong, S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.90
Space group	P 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	120.386, 120.386, 120.386, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 20.8

The structure of Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432 also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432 (pdb code 5xlj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432, PDB code: 5xlj:

Sodium binding site 1 out of 1 in the Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Flagellar Cap Protein Flid D2-D3 Domains From Serratia Marcescens in Space Group P432 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na306 b:19.9 occ:1.00 O A:LYS163 2.4 13.4 1.0 O A:HOH458 2.4 12.9 0.5 O A:HOH526 2.6 23.2 1.0 C A:LYS163 3.6 13.7 1.0 CA A:ALA164 3.9 12.3 1.0 N A:ALA164 4.2 12.7 1.0 OG1 A:THR141 4.2 11.7 1.0 C A:ALA164 4.4 11.9 1.0 N A:GLY165 4.5 11.6 1.0 O A:ALA162 4.8 14.4 1.0 CA A:LYS163 4.8 14.4 1.0 CB A:LYS163 4.8 16.1 1.0 O A:HOH436 4.8 15.2 1.0 CL A:CL302 4.9 25.8 1.0 O A:ALA164 5.0 12.9 1.0

S.Y.Cho, W.S.Song, H.J.Hong, G.S.Lee, S.G.Kang, H.J.Ko, P.H.Kim, S.I.Yoon. Tetrameric Structure of the Flagellar Cap Protein Flid From Serratia Marcescens. Biochem. Biophys. Res. V. 489 63 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 28527888
DOI: 10.1016/J.BBRC.2017.05.093