Sodium in PDB 4jer: 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form)

The structure of 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form), PDB code: 4jer was solved by R.Kumar, S.Lovell, K.P.Battaile, M.Rivera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.04 / 1.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.340, 70.340, 74.840, 90.00, 90.00, 90.00
R / Rfree (%)	13.9 / 14.6

The binding sites of Sodium atom in the 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form) (pdb code 4jer). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form), PDB code: 4jer:

Sodium binding site 1 out of 1 in the 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.1A Resolution Apo Structure of the Hemophore Hasa From Yersinia Pestis (Tetragonal Form) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:14.4 occ:1.00 O A:HOH513 2.7 32.9 1.0 O A:LEU172 2.7 14.1 1.0 O A:HOH361 2.8 24.2 1.0 O A:PHE169 2.8 11.7 1.0 O A:ALA175 2.8 15.1 1.0 O A:LYS170 3.2 15.3 1.0 C A:LYS170 3.5 13.6 1.0 N A:LEU172 3.6 13.7 1.0 C A:LEU172 3.6 14.2 1.0 C A:ALA175 3.8 13.4 1.0 C A:PHE169 4.0 11.2 1.0 N A:ASP171 4.0 13.3 1.0 C A:ASP171 4.0 14.1 1.0 CA A:LYS170 4.1 12.8 1.0 O A:HOH459 4.1 35.6 1.0 CA A:LEU172 4.1 13.7 1.0 OH A:TYR7 4.3 14.6 1.0 CB A:ALA175 4.3 13.4 1.0 CA A:ASP171 4.3 13.9 1.0 O A:HOH505 4.5 40.8 1.0 CA A:ALA175 4.5 13.0 1.0 N A:LYS170 4.5 11.4 1.0 CE1 A:TYR7 4.5 12.1 1.0 N A:SER173 4.6 15.3 1.0 N A:ALA175 4.6 13.1 1.0 CB A:LEU172 4.7 13.5 1.0 O A:ASP171 4.8 15.8 1.0 N A:SER176 4.8 12.7 1.0 CA A:SER173 4.9 16.9 0.5 CZ A:TYR7 4.9 12.7 1.0 CA A:SER173 4.9 16.8 0.5 CA A:SER176 4.9 13.1 0.6 O A:HOH399 4.9 25.1 1.0

R.Kumar, S.Lovell, H.Matsumura, K.P.Battaile, P.Moenne-Loccoz, M.Rivera. The Hemophore Hasa From Yersinia Pestis (Hasayp) Coordinates Hemin with A Single Residue, TYR75, and with Minimal Conformational Change. Biochemistry V. 52 2705 2013.
ISSN: ISSN 0006-2960
PubMed: 23578210
DOI: 10.1021/BI400280Z