Sodium in PDB 5ysu: Plumbagin in Complex with CRM1-RANM189D-RANBP1

The structure of Plumbagin in Complex with CRM1-RANM189D-RANBP1, PDB code: 5ysu was solved by Q.Sun, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	105.063, 105.063, 306.534, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 24.3

The structure of Plumbagin in Complex with CRM1-RANM189D-RANBP1 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Plumbagin in Complex with CRM1-RANM189D-RANBP1 (pdb code 5ysu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Plumbagin in Complex with CRM1-RANM189D-RANBP1, PDB code: 5ysu:

Sodium binding site 1 out of 1 in the Plumbagin in Complex with CRM1-RANM189D-RANBP1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Plumbagin in Complex with CRM1-RANM189D-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1104 b:88.5 occ:1.00 OH C:TYR230 2.4 81.3 1.0 O C:VAL259 3.2 65.8 1.0 OG1 C:THR275 3.5 67.4 1.0 CD1 C:ILE264 3.5 99.3 1.0 CZ C:TYR230 3.7 80.0 1.0 CG2 C:THR275 3.9 66.8 1.0 CE2 C:PHE278 3.9 62.5 1.0 C C:VAL259 4.0 66.1 1.0 CG1 C:VAL259 4.0 67.7 1.0 CA C:SER260 4.1 70.2 1.0 CE1 C:TYR230 4.2 79.7 1.0 CZ C:PHE278 4.3 61.9 1.0 CB C:THR275 4.3 67.6 1.0 N C:SER260 4.4 67.3 1.0 OD1 C:ASN326 4.5 61.4 1.0 C C:SER260 4.6 73.0 1.0 CE2 C:TYR230 4.8 80.6 1.0 NH1 C:ARG325 4.9 88.8 1.0 O C:SER260 5.0 72.3 1.0 CG1 C:ILE264 5.0 0.3 1.0

Q.Sun, Y.Zhang. RANL182A in Complex with RANBP1-CRM1 To Be Published.