Atomistry » Sodium » PDB 4j0p-4jer » 4j3f
Atomistry »
  Sodium »
    PDB 4j0p-4jer »
      4j3f »

Sodium in PDB 4j3f: Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.

Enzymatic activity of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.

All present enzymatic activity of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.:
1.3.1.9;

Protein crystallography data

The structure of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold., PDB code: 4j3f was solved by S.Mehboob, T.Boci, L.Brubaker, B.D.Santarsiero, M.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.79 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.421, 123.360, 202.717, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. (pdb code 4j3f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold., PDB code: 4j3f:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in 4j3f

Go back to Sodium Binding Sites List in 4j3f
Sodium binding site 1 out of 5 in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na305

b:28.2
occ:1.00
CE1 A:HIS29 3.8 14.1 1.0
ND2 A:ASN55 3.9 16.7 1.0
CB A:ASN55 4.1 14.7 1.0
NE2 A:HIS29 4.3 14.3 1.0
O A:HOH521 4.5 29.1 1.0
CG A:ASN55 4.5 15.8 1.0
ND1 A:HIS29 4.9 13.5 1.0

Sodium binding site 2 out of 5 in 4j3f

Go back to Sodium Binding Sites List in 4j3f
Sodium binding site 2 out of 5 in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na304

b:29.6
occ:1.00
OG C:SER66 3.4 13.9 1.0
O C:HOH530 3.6 20.2 1.0
N C:GLN68 3.8 15.3 1.0
N C:ASP67 3.9 14.4 1.0
CB C:GLN68 4.0 18.0 1.0
CA C:SER66 4.1 14.1 1.0
CB C:SER66 4.2 13.9 1.0
C C:SER66 4.3 14.2 1.0
CA C:GLN68 4.5 16.4 1.0
CA C:ASP67 4.6 15.6 1.0
CB C:ASP67 4.7 16.9 1.0
C C:ASP67 4.7 15.1 1.0

Sodium binding site 3 out of 5 in 4j3f

Go back to Sodium Binding Sites List in 4j3f
Sodium binding site 3 out of 5 in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Na305

b:31.1
occ:1.00
O F:HOH472 3.4 23.4 1.0
N F:GLN68 3.6 15.7 1.0
OG F:SER66 3.6 14.3 1.0
N F:ASP67 3.6 14.1 1.0
CB F:GLN68 3.9 19.2 1.0
CA F:SER66 4.2 13.4 1.0
C F:SER66 4.2 13.7 1.0
CB F:SER66 4.3 13.9 1.0
CA F:GLN68 4.3 16.8 1.0
CB F:ASP67 4.4 15.9 1.0
CA F:ASP67 4.4 15.3 1.0
C F:ASP67 4.5 15.1 1.0

Sodium binding site 4 out of 5 in 4j3f

Go back to Sodium Binding Sites List in 4j3f
Sodium binding site 4 out of 5 in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Na304

b:31.4
occ:1.00
ND2 G:ASN55 3.6 21.4 1.0
NE2 G:HIS29 3.8 15.8 1.0
CB G:ASN55 4.0 16.3 1.0
CG G:ASN55 4.3 18.1 1.0
CE1 G:HIS29 4.7 14.9 1.0
CD2 G:HIS29 4.8 14.7 1.0
O G:HOH537 4.9 33.4 1.0

Sodium binding site 5 out of 5 in 4j3f

Go back to Sodium Binding Sites List in 4j3f
Sodium binding site 5 out of 5 in the Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Na304

b:31.9
occ:1.00
O H:HOH478 3.4 25.6 1.0
OG H:SER66 3.5 14.7 1.0
N H:GLN68 3.8 16.8 1.0
N H:ASP67 3.8 16.2 1.0
CB H:GLN68 4.1 20.1 1.0
CA H:SER66 4.2 15.3 1.0
CB H:SER66 4.2 15.1 1.0
C H:SER66 4.3 15.4 1.0
CA H:ASP67 4.5 17.5 1.0
CB H:ASP67 4.5 19.2 1.0
CA H:GLN68 4.6 17.7 1.0
C H:ASP67 4.7 17.0 1.0

Reference:

S.Mehboob, T.Boci, L.Brubaker, B.D.Santarsiero, M.E.Johnson, K.H.Hevener. Crystal Structure of Fabi From F. Tularensis in Complex with Novel Inhibitors Based on the Benzimidazole Scaffold. To Be Published.
Page generated: Mon Oct 7 16:11:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy