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Sodium in PDB, part 120 (files: 4761-4800), PDB 4pod-4q39

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 4761-4800 (PDB 4pod-4q39).
  1. 4pod (Na: 1) - Structure of Triosephosphate Isomerase I170V Mutant Human Enzyme.
    Other atoms: K (2); Br (1);
  2. 4poe (Na: 1) - Urate Oxidase Co-Crystallized with Uric Acid and Azide
  3. 4pp4 (Na: 3) - Minute Virus of Mice Non-Structural Protein-1N-Terminal Nuclease Domain Reveals A Unique ZN2+ Coordination in the Active Site Pocket and Shows A Novel Mode of Dna Recognition at the Origin of Replication
  4. 4ppf (Na: 2) - Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N
  5. 4ppx (Na: 2) - Dna Polymerase Beta E295K with Spiroiminodihydantoin in Templating Position
  6. 4pqh (Na: 1) - Crystal Structure of Glutathione Transferase LAMBDA1 From Populus Trichocarpa
  7. 4pr0 (Na: 1) - Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-N3
  8. 4pr8 (Na: 1) - Urate Oxidase Azide Uric Acid Ternary Complex
  9. 4pri (Na: 3) - Crystal Structure of TK3 Tcr-Hla-B*35:08-Hpvg Complex
    Other atoms: Cl (2);
  10. 4psa (Na: 1) - Mycobacterium Tuberculosis Reca Glycerol Bound Low Temperature Structure Iic-N1
  11. 4psp (Na: 3) - Crystal Structure of GH29 Family Alpha-L-Fucosidase From Fusarium Graminearum in the Open Form
  12. 4psr (Na: 3) - Crystal Structure of Alpha-L-Fucosidase From Fusarium Graminearum in the Open Form in Complex with L-Fucose
  13. 4ptf (Na: 1) - Ternary Crystal Structure of Yeast Dna Polymerase Epsilon with Template G
    Other atoms: Ca (4);
  14. 4pu5 (Na: 1) - Shewanella Oneidensis Toxin Antitoxin System Toxin Protein Hipa Bound with Amppnp and Mg
    Other atoms: Mg (2);
  15. 4puv (Na: 1) - Urate Oxidase Di-Azide Complex
  16. 4pv2 (Na: 4) - Crystal Structure of Potassium-Dependent Plant-Type L-Asparaginase From Phaseolus Vulgaris in Complex with K+ and Na+ Cations
    Other atoms: K (4);
  17. 4pv3 (Na: 4) - Crystal Structure of Potassium-Dependent Plant-Type L-Asparaginase From Phaseolus Vulgaris in Complex with Na+ Cations
  18. 4pve (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
    Other atoms: Cl (1);
  19. 4pvh (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
  20. 4pvj (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
  21. 4pvk (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
    Other atoms: Cl (1);
  22. 4pvp (Na: 2) - Crystal Structure of Malonate-Bound Human L-Asparaginase Protein
  23. 4pvq (Na: 2) - Crystal Structure of Sulfate-Bound Human L-Asparaginase Protein
    Other atoms: I (4);
  24. 4pvr (Na: 2) - Crystal Structure of Partially-Cleaved Human L-Asparaginase Protein in Complex with L-Aspartate
  25. 4pvs (Na: 2) - Crystal Structure of Fully-Cleaved Human L-Asparaginase Protein in Complex with L-Aspartate
  26. 4pwb (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
    Other atoms: Xe (2);
  27. 4pwc (Na: 2) - Engineered Oxidase Reveals Steric Control of Oxygen Reduction
    Other atoms: Br (70);
  28. 4pxl (Na: 2) - Structure of Zm ALDH2-3 (RF2C) in Complex with Nad
    Other atoms: Ca (1);
  29. 4py9 (Na: 4) - Crystal Structure of An Exopolyphosphatase-Related Protein From Bacteroides Fragilis. Northeast Structural Genomics Target BFR192
  30. 4pyi (Na: 1) - Human Apo Comt
  31. 4pyj (Na: 1) - Human Apo-Comt, Single Domain Swap
    Other atoms: Mg (1); Cl (1);
  32. 4pyk (Na: 1) - Human Comt, Double Domain Swap
    Other atoms: Mg (1); Cl (1);
  33. 4pyq (Na: 2) - Humanized Rat Apo-Comt in Complex with A Ureido-Benzamidine
    Other atoms: Cl (1);
  34. 4pz2 (Na: 4) - Structure of Zm ALDH2-6 (RF2F) in Complex with Nad
  35. 4q04 (Na: 2) - Crystal Structure of URE3-Bp From Entomaeba Histolytica Without Calcium
    Other atoms: Mg (1);
  36. 4q05 (Na: 4) - Crystal Structure of An Esterase E25
  37. 4q1h (Na: 1) - Structure and Mechanism of A Dehydratase/Decarboxylase Enzyme Couple Involved in Polyketide Beta-Branching
  38. 4q1j (Na: 1) - Structure and Mechanism of A Dehydratase/Decarboxylase Enzyme Couple Involved in Polyketide Beta-Branching
  39. 4q29 (Na: 20) - Ensemble Refinement of PLU4264 Protein From Photorhabdus Luminescens
    Other atoms: Ni (40);
  40. 4q39 (Na: 2) - Pyld in Complex with Pyrrolysine and Nadh
    Other atoms: Mg (2);
Page generated: Fri Dec 24 09:46:30 2021

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