Sodium in PDB 4ppf: Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N

The structure of Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N, PDB code: 4ppf was solved by A.V.Chandran, J.R.Prabu, N.K.Patil, K.Muniyappa, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.30
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	107.020, 107.020, 70.270, 90.00, 90.00, 120.00
R / Rfree (%)	18.4 / 23.5

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N (pdb code 4ppf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N, PDB code: 4ppf:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:46.3 occ:1.00 O A:HOH521 2.1 43.3 1.0 O A:HOH569 2.9 51.6 1.0 N A:ASP101 3.6 42.0 1.0 CD1 A:LEU100 4.0 38.5 1.0 CD2 A:TYR104 4.1 38.1 1.0 CD1 A:LEU78 4.1 30.9 1.0 CB A:ASP101 4.2 41.5 1.0 CA A:LEU100 4.2 38.9 1.0 CG2 A:THR74 4.3 33.1 1.0 C A:LEU100 4.4 40.6 1.0 CA A:ASP101 4.4 41.5 1.0 O A:ASP101 4.5 40.0 1.0 O A:ALA99 4.5 36.0 1.0 CE2 A:TYR104 4.6 37.7 1.0 OHB A:FLC401 4.6 44.4 1.0 C A:ASP101 4.9 41.0 1.0 O A:HOH534 5.0 55.4 1.0

Sodium binding site 2 out of 2 in the Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mycobacterium Tuberculosis Reca Citrate Bound Low Temperature Structure Iia-N within 5.0Å range: probe atom residue distance (Å) B Occ A:Na406 b:50.9 occ:1.00 O A:HOH532 2.2 55.8 1.0 O A:HOH504 2.7 33.2 1.0 OE1 A:GLU321 3.0 54.2 1.0 O A:HOH505 3.5 38.5 1.0 N A:ILE46 3.8 32.1 1.0 CB A:ILE46 3.8 33.8 1.0 CD A:GLU321 3.9 56.0 1.0 NE A:ARG271 4.0 47.1 1.0 CA A:ILE46 4.1 33.4 1.0 CG A:ARG271 4.1 40.8 1.0 CD A:ARG271 4.2 43.2 1.0 OD2 A:ASP49 4.3 44.6 1.0 CG A:GLU321 4.4 55.9 1.0 C A:SER45 4.4 33.4 1.0 CD2 A:LEU275 4.5 40.1 1.0 CD1 A:ILE46 4.5 36.0 1.0 O A:GLY44 4.6 38.4 1.0 CG2 A:ILE46 4.7 34.0 1.0 CG1 A:ILE46 4.7 35.3 1.0 C A:GLY44 4.8 37.4 1.0 OE2 A:GLU321 4.8 63.0 1.0 CA A:SER45 4.8 33.5 1.0 O A:HOH507 4.9 64.1 1.0 CG A:LEU275 4.9 41.5 1.0 N A:SER45 4.9 35.1 1.0 CB A:ARG271 5.0 37.2 1.0

A.V.Chandran, J.R.Prabu, A.Nautiyal, K.N.Patil, K.Muniyappa, M.Vijayan. Structural Studies on Mycobacterium Tuberculosis Reca: Molecular Plasticity and Interspecies Variability J.Biosci. V. 40 13 2015.
ISSN: ISSN 0250-4774
PubMed: 25740138
DOI: 10.1007/S12038-014-9497-X