Sodium in PDB 3d97: Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution

The structure of Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution, PDB code: 3d97 was solved by S.Vaezeslami, J.H.Geiger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.90 / 1.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.553, 37.220, 61.058, 73.40, 73.70, 89.73
R / Rfree (%)	15.4 / 22.7

The binding sites of Sodium atom in the Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution (pdb code 3d97). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution, PDB code: 3d97:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na500 b:46.3 occ:1.00 OE2 B:GLU103 2.3 50.9 1.0 CD B:GLU103 3.1 47.7 1.0 OE1 B:GLU103 3.8 49.5 1.0 CG B:GLU103 3.8 41.9 1.0 CB B:GLU103 4.7 38.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the R132K:R111L:L121E Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.50 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:51.9 occ:1.00 OE2 B:GLU137 2.2 29.5 1.0 CD B:GLU137 3.2 30.6 1.0 CG B:GLU137 3.4 27.7 1.0 CD B:LYS8 3.8 30.1 1.0 CE B:LYS8 4.0 39.0 1.0 NZ B:LYS8 4.2 46.6 1.0 OE1 B:GLU137 4.4 33.2 1.0 O B:HOH521 4.5 36.4 1.0 CB B:GLU137 4.5 23.0 1.0

S.Vaezeslami, X.Jia, C.Vasileiou, B.Borhan, J.H.Geiger. Determining Crystal Structures of Proteins and Protein Complexes By X-Ray Crystallography: X-Ray Crystallographic Studies of the Mutants of Cellular Retinoic Acid Binding Protein Type II Toward Designing A Mimic of Rhodopsin. Thesis.