Sodium in the structure of Formyl-Coa Transferase Mutant Variant W48F (pdb 2vjp)

The binding sites of Sodium atom in the structure of Formyl-Coa Transferase Mutant Variant W48F (pdb code 2vjp). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 2vjp structure was solved by C.G.TOYOTA, C.L.BERTHOLD, A.GRUEZ, S.JONSSON, Y.LINDQVIST, C.CAMBILLAU, N.G.J.RICHARDS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 30.0-1.9 Space group I4 a (A) 152.716 b (A) 152.716 c (A) 99.448 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 16.6 Rfree (%) 20.1 Sodium Binding Sites: Sodium binding site 1 out of 1 in 2vjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 2vjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp294, A: Met295, A: Asp297, A: Tyr343, A: Hoh2340, A: Hoh2344, conact list: Atom Atom Distance (A) Na O A:Asp294 2.44 Na CB A:Asp294 4.66 Na C A:Asp294 3.50 Na CA A:Asp294 4.18 Na O A:Met295 4.58 Na N A:Met295 4.50 Na C A:Met295 4.68 Na CA A:Met295 4.74 Na N A:Asp297 4.39 Na CB A:Asp297 4.60 Na CB A:Asp297 4.49 Na OD2 A:Asp297 4.20 Na OD1 A:Asp297 2.65 Na OD1 A:Asp297 4.27 Na CG A:Asp297 3.61 Na CG A:Asp297 4.71 Na CA A:Asp297 4.38 Na CA A:Asp297 4.36 Na OH A:Tyr343 4.33 Na O A:Hoh2340 4.03 Na O A:Hoh2344 2.54 interactive model: