Sodium in PDB 8wn6: Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex

All present enzymatic activity of Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex:
3.2.1.21;

The structure of Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex, PDB code: 8wn6 was solved by C.C.Lin, T.J.Lu, S.Fushinobu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.31 / 1.64
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.542, 68.978, 96.389, 90, 90, 90
R / Rfree (%)	16.5 / 19.3

The binding sites of Sodium atom in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex (pdb code 8wn6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex, PDB code: 8wn6:

Sodium binding site 1 out of 1 in the Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of GH1 Beta-Glucosidase TD2F2 E352Q Sophorose Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:21.3 occ:0.00 O A:HOH614 2.1 13.0 1.0 O A:HIS321 2.5 14.9 1.0 O A:HOH776 2.9 16.6 1.0 C A:HIS321 3.5 15.1 1.0 O A:HOH811 3.8 30.7 1.0 O A:HOH799 3.9 21.1 1.0 O A:THR322 4.0 17.6 1.0 N A:HIS321 4.3 17.3 1.0 CA A:HIS321 4.3 17.2 1.0 OE1 A:GLN371 4.3 12.7 1.0 CB A:HIS321 4.4 19.5 1.0 N A:THR322 4.4 16.3 1.0 CA A:THR322 4.4 14.6 1.0 NE2 A:GLN371 4.5 15.4 1.0 C A:THR322 4.5 17.9 1.0 CD A:GLN371 4.8 13.1 1.0

C.C.Lin, T.J.Lu, S.Fushinobu. Structural Basis For Specific Hydrolysis and Synthesis of Beta-1-2-Glucosidic Linkage By Glucose-Tolerant Beta-Glucosidase TD2F2 To Be Published.