Sodium in the structure of Crystal Structure of An Uncharacterized Conserved Protein Yjbq/UPF0047 Family, Ortholog Yugu B.Subtilis (CA_C0907) From Clostridium Acetobutylicum At 1.31 A Resolution (pdb 1vmh)

The binding sites of Sodium atom in the structure of Crystal Structure of An Uncharacterized Conserved Protein Yjbq/UPF0047 Family, Ortholog Yugu B.Subtilis (CA_C0907) From Clostridium Acetobutylicum At 1.31 A Resolution (pdb code 1vmh). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 1vmh structure was solved by JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 23.1-1.3 Space group H3 a (A) 79.406 b (A) 79.406 c (A) 50.688 alpha (°) 90.00 beta (°) 90.00 gamma (°) 120.00 Rfactor (%) 15.7 Rfree (%) 18.5 Sodium Binding Sites: Sodium binding site 1 out of 1 in 1vmh Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 1vmh. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser91, A: Leu92, A: Met93, A: Hoh138, A: Hoh143, conact list: Atom Atom Distance (A) Na O A:Ser91 4.20 Na O A:Leu92 2.51 Na CB A:Leu92 4.98 Na C A:Leu92 3.54 Na CA A:Leu92 4.06 Na O A:Met93 4.62 Na N A:Met93 4.61 Na C A:Met93 4.66 Na CA A:Met93 4.90 Na O A:Hoh138 2.35 Na O A:Hoh143 4.46 interactive model: