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Sodium in PDB 9os0: Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals

Enzymatic activity of Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals

All present enzymatic activity of Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals:
3.2.1.17;

Sodium Binding Sites:

The binding sites of Sodium atom in the Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals (pdb code 9os0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals, PDB code: 9os0:

Sodium binding site 1 out of 1 in 9os0

Go back to Sodium Binding Sites List in 9os0
Sodium binding site 1 out of 1 in the Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microed Structure of Lysozyme Complexed with N,N',N"- Triacetylchitotriose From Cocktail-Soaked Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:26.8
occ:1.00
OG A:SER72 2.0 47.6 1.0
O A:ARG73 3.1 26.4 1.0
OD1 A:ASN65 3.1 22.9 1.0
O A:CYS64 3.2 18.2 1.0
CA A:ASN65 3.4 18.4 1.0
CB A:SER72 3.5 30.1 1.0
C A:ARG73 3.6 25.7 1.0
CB A:ASN65 3.7 19.3 1.0
O A:SER60 3.7 22.6 1.0
C A:SER72 3.8 29.4 1.0
O A:SER72 3.8 28.9 1.0
CG A:ASN65 3.9 22.7 1.0
C A:CYS64 4.0 18.2 1.0
CB A:ASN74 4.0 17.1 1.0
N A:ASN65 4.1 18.3 1.0
N A:ARG73 4.1 29.1 1.0
N A:ASN74 4.2 24.3 1.0
CA A:SER72 4.3 30.5 1.0
CA A:ARG73 4.3 26.9 1.0
CA A:ASN74 4.4 20.8 1.0
N A:ASP66 4.6 16.8 1.0
C A:ASN65 4.6 18.1 1.0
CG A:ASN74 4.9 19.5 1.0
C A:SER60 4.9 20.6 1.0

Reference:

N.W.Vlahakis, C.W.Flowers, M.Liu, M.Agdanowski, S.Johnson, J.A.Summers, L.M.C.Jacobs, C.Keyser, P.Russell, S.Rose, J.Orlans, N.Adhami, Y.Chen, M.R.Sawaya, S.Basu, D.De Sanctis, Y.Chen, S.Wakatsuki, H.M.Nelson, J.Loo, Y.Tang, J.A.Rodriguez. Combining Microed and Native Mass Spectrometry For Structural Discovert of Enzyme-Small Molecule Complexes To Be Published.
Page generated: Mon Aug 18 17:31:28 2025

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