Sodium in PDB 9orz: Microed Structure of Apo-Form Lysozyme

All present enzymatic activity of Microed Structure of Apo-Form Lysozyme:
3.2.1.17;

The binding sites of Sodium atom in the Microed Structure of Apo-Form Lysozyme (pdb code 9orz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Microed Structure of Apo-Form Lysozyme, PDB code: 9orz:

Sodium binding site 1 out of 1 in the Microed Structure of Apo-Form Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microed Structure of Apo-Form Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:27.8 occ:1.00 O A:SER60 2.1 28.1 1.0 O A:ARG73 2.2 32.2 1.0 OG A:SER72 2.3 51.3 1.0 O A:CYS64 2.4 23.8 1.0 CB A:SER72 2.8 33.9 1.0 C A:ARG73 3.3 31.5 1.0 C A:SER60 3.3 26.2 1.0 C A:CYS64 3.5 23.8 1.0 N A:ARG73 3.6 34.9 1.0 C A:SER72 3.8 33.1 1.0 CA A:SER72 3.9 34.3 1.0 CA A:ASN65 4.0 22.7 1.0 O A:ARG61 4.0 32.2 1.0 C A:ARG61 4.1 30.5 1.0 CA A:SER60 4.1 24.9 1.0 CA A:ARG73 4.1 32.7 1.0 N A:ASN65 4.1 22.6 1.0 N A:ASN74 4.1 30.6 1.0 N A:ARG61 4.3 28.4 1.0 CA A:ASN74 4.3 27.1 1.0 CA A:ARG61 4.3 29.9 1.0 N A:CYS64 4.4 24.3 1.0 O A:SER72 4.4 32.6 1.0 N A:TRP62 4.5 29.6 1.0 CB A:SER60 4.5 20.6 1.0 CB A:ASN74 4.6 23.4 1.0 CA A:CYS64 4.6 23.2 1.0 C A:TRP62 4.8 27.9 1.0 CB A:ASN65 4.8 23.5 1.0 N A:TRP63 4.9 25.4 1.0 OD1 A:ASN65 4.9 27.1 1.0 CA A:TRP62 5.0 29.3 1.0 N A:ASP66 5.0 22.8 1.0 CB A:THR69 5.0 32.4 1.0

N.W.Vlahakis, C.W.Flowers, M.Liu, M.Agdanowski, S.Johnson, J.A.Summers, L.M.C.Jacobs, C.Keyser, P.Russell, S.Rose, J.Orlans, N.Adhami, Y.Chen, M.R.Sawaya, S.Basu, D.De Sanctis, Y.Chen, S.Wakatsuki, H.M.Nelson, J.Loo, Y.Tang, J.A.Rodriguez. Combining Microed and Native Mass Spectrometry For Structural Discovert of Enzyme-Small Molecule Complexes To Be Published.