Sodium in PDB 9i6k: Hen Egg-White Lysozyme Structure at 85% Relative Humidity

All present enzymatic activity of Hen Egg-White Lysozyme Structure at 85% Relative Humidity:
3.2.1.17;

The structure of Hen Egg-White Lysozyme Structure at 85% Relative Humidity, PDB code: 9i6k was solved by D.Zabelskii, E.Round, H.Han, D.Von Stetten, D.Melo, R.De Wijn, A.Round, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.86 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79, 79, 38, 90, 90, 90
R / Rfree (%)	16.1 / 19.6

The structure of Hen Egg-White Lysozyme Structure at 85% Relative Humidity also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Hen Egg-White Lysozyme Structure at 85% Relative Humidity (pdb code 9i6k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg-White Lysozyme Structure at 85% Relative Humidity, PDB code: 9i6k:

Sodium binding site 1 out of 1 in the Hen Egg-White Lysozyme Structure at 85% Relative Humidity


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg-White Lysozyme Structure at 85% Relative Humidity within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:19.9 occ:1.00 O A:SER60 2.3 19.8 1.0 OG A:SER72 2.5 26.5 1.0 O A:HOH1192 2.5 29.4 1.0 O A:CYS64 2.5 20.4 1.0 O A:ARG73 2.5 26.1 1.0 O A:HOH1157 2.5 20.3 1.0 CB A:SER72 3.2 25.1 1.0 C A:SER60 3.5 16.5 1.0 C A:CYS64 3.5 15.5 1.0 C A:ARG73 3.6 26.3 1.0 N A:ARG73 3.9 21.9 1.0 CA A:ASN65 4.0 15.8 1.0 C A:SER72 4.0 32.4 1.0 CA A:SER60 4.2 16.4 1.0 N A:ASN65 4.2 14.8 1.0 CA A:SER72 4.2 24.8 1.0 CA A:ARG73 4.4 23.5 1.0 N A:ASN74 4.4 26.6 1.0 N A:CYS64 4.4 13.6 1.0 CB A:SER60 4.5 17.1 1.0 C A:ARG61 4.5 23.9 0.5 O A:SER72 4.5 25.2 1.0 CA A:ASN74 4.5 20.4 1.0 O A:HOH1217 4.6 49.9 1.0 N A:ARG61 4.6 16.2 0.5 O A:ARG61 4.6 23.4 0.5 O A:ARG61 4.6 23.3 0.5 C A:ARG61 4.6 23.9 0.5 N A:ARG61 4.6 16.1 0.5 CA A:CYS64 4.6 15.3 1.0 CB A:ASN74 4.7 19.5 1.0 CA A:ARG61 4.8 22.2 0.5 CB A:THR69 4.8 16.6 1.0 CL A:CL1007 4.8 37.3 1.0 N A:ASP66 4.8 14.8 1.0 CA A:ARG61 4.8 22.1 0.5 N A:TRP62 4.8 22.1 1.0 OD1 A:ASN65 4.8 28.6 1.0 O A:THR69 4.9 20.8 1.0 C A:ASN65 4.9 16.1 1.0 CB A:ASN65 4.9 16.2 1.0

D.Zabelskii, E.Round, H.Han, D.Von Stetten, R.Letrun, C.Kim, T.Sato, D.Melo, R.De Wijn, K.Kharitonov, P.Smyth, K.Doerner, M.Kloos, T.Dietze, L.Lopez, R.Bean, A.Round. Viscoelastic Characterization of the Lipid Cubic Phase Provides Insights Into High-Viscosity Extrusion Injection For Xfel Experiments. To Be Published.