Sodium in PDB, part 307 (files: 12241-12280),
PDB 9gbt-9icj
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12241-12280 (PDB 9gbt-9icj).
-
9gbt (Na: 1) - De Novo Designed Retro-Aldolase 13 (RAD13)
-
9gcv (Na: 1) - Identification of Chloride Ions in Lysozyme at Long Wavelengths
Other atoms:
Cl (5);
-
9gcz (Na: 1) - Xusb Lipoprotein Bound to Ferric Enterobactin
Other atoms:
Fe (2);
-
9gf3 (Na: 4) - This Peptide Is A Variant of the De Novo Coiled-Coil Heptameric Peptic, Cc-Hept, Which Consists of 4 Heptad Repeats. This Peptide Is Denoted As Cc-Hept-HEN2 As Its Second Heptad Repeat Has Been Replaced with A Hendecad Repeat.
-
9gf4 (Na: 2) - This Peptide Is A Variant of the Previously Designed De Novo Heptameric Coiled-Coil, Cc-Hept-IV, Which Consists of 4 Heptad Repeats. We Have Denoted This De Novo Peptide Cc-Hept-IV-HEN2 As It Includes A Noncanonical, Hendecad Repeat Which Replaces the Second Heptad Repeat in the Original Cc-Hept-IV Sequence.
-
9ggi (Na: 1) - Crystal Structure of Argininosuccinate Lyase From Arabidopsis Thaliana (Atasl)
Other atoms:
Cl (6);
-
9ghx (Na: 1) - Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.
Other atoms:
Re (5);
Cl (4);
-
9gky (Na: 2) - Crystal Structure of Histone Deacetylase (Hdah) From Vibrio Cholerae in Complex with Decanoic Acid
Other atoms:
Zn (2);
K (9);
-
9gla (Na: 2) - Crystal Structure of A CDK2-Based CDK7 Mimic with Inhibitor SY5609
Other atoms:
F (3);
-
9glf (Na: 2) - Anthraquinone Pigment Production Regulated By Cinnamic Acid
-
9grq (Na: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Theophylline
Other atoms:
Zn (2);
-
9gtj (Na: 6) - Chlorite Dismutase From Pseudomonas Sp.
Other atoms:
Cl (1);
Fe (2);
-
9gyb (Na: 1) - Crystal Structure of the Recombinant Codh From Rhodopspirillum Rubrum Produced in Escherichia Coli
Other atoms:
Ni (6);
Fe (60);
-
9gyy (Na: 2) - Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium
Other atoms:
Cl (1);
Fe (2);
-
9h0n (Na: 1) - Fucosylated Lacto-N-Biose Binding Protein From Bifidobacterium Longum Subsp. Infantis in Complex with Galacto-N-Biose
-
9h0o (Na: 2) - Fucosylated Lacto-N-Biose Binding Protein From Bifidobacterium Longum Subsp. Infantis in Complex with Lacto-N-Biose
Other atoms:
Ca (1);
-
9h3e (Na: 1) - Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip
Other atoms:
Cl (3);
-
9hae (Na: 3) - Dust Mite Allergen Der F 7 with Computationally Designed DERF7_B2 Binder
-
9hfu (Na: 1) - CAPRIN1 Peptide Bound to Spop Math Domain
-
9hy1 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 7.5 (Dimeric State From Gel Filtration)
Other atoms:
Cl (2);
-
9hy2 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 7.5 (Monomeric State From Gel Filtration)
Other atoms:
Cl (2);
-
9hy3 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 5.5
Other atoms:
Cl (4);
-
9hy5 (Na: 2) - Sc-4E (Scfv Derived From the Mab 4E1 Against CD93) Crystallized at pH 9.0
Other atoms:
Cl (6);
-
9i6h (Na: 5) - Room Temperature Structure of KR2 Rhodopsin in Pentameric Form at 95% Relative Humidity
-
9i6i (Na: 5) - Room-Temperature Structure of KR2 Rhodopsin in Pentameric Form at 85% Relative Humidity
-
9i6j (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 95% Relative Humidity
Other atoms:
Cl (5);
-
9i6k (Na: 1) - Hen Egg-White Lysozyme Structure at 85% Relative Humidity
Other atoms:
Cl (5);
-
9i6l (Na: 1) - Hen Egg-White Lysozyme Structure at 75% Relative Humidity
Other atoms:
Cl (5);
-
9i6m (Na: 1) - Hen Egg-White Lysozyme Structure at 65% Relative Humidity
Other atoms:
Cl (5);
-
9i6n (Na: 1) - Hen Egg-White Lysozyme Structure Collected at Euxfel Spb/Sfx with Hve Injection Method
Other atoms:
Cl (3);
-
9i6o (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 95% Relative Humidity
Other atoms:
Cl (4);
-
9i6p (Na: 1) - Hen Egg-White Lysozyme Structure Embedded in Lcp Medium at 85% Relative Humidity
Other atoms:
Cl (4);
-
9icb (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and COCL2
Other atoms:
Co (2);
-
9icc (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and CRCL3
Other atoms:
Cr (1);
-
9ice (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and CUCL2 (0.1 Millimolar)
-
9icf (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
Other atoms:
Zn (2);
-
9icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
-
9ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
-
9ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (2);
-
9icj (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna
Page generated: Sat Aug 23 06:33:02 2025
|
