Sodium in PDB, part 307 (files: 12241-12280),
PDB 9fs3-9gzu
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12241-12280 (PDB 9fs3-9gzu).
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9fs3 (Na: 1) - Mutant S1538L of the Dihydroorotase Domain of Human Cad Protein Bound to Carbamoyl Aspartate
Other atoms:
Zn (4);
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9fu3 (Na: 1) - Closed Codh/Acs in the Methylated State
Other atoms:
Fe (14);
Ni (3);
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9fud (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - Without Ligand Glcnac (Apo)
Other atoms:
Cl (4);
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9fue (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Si Chip): Lysozyme - with Ligand Glcnac
Other atoms:
Cl (4);
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9fup (Na: 1) - Serial Microseconds Crystallography at ID29 Using Fixed-Target (Small Foils): A2A Adenosine Receptor Co-Crystallised with Istradefylline
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9fvk (Na: 1) - Crystal Structure of Amyloidogenic Light Chain Al-55 in Open Conformation.
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9fw2 (Na: 1) - Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14
Other atoms:
Zn (4);
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9fw6 (Na: 2) - A Ternary Complex of Plant Adenosine Kinase 1 From Moss Physcomitrella Patens (PPADK1) with Adenosine and Adp
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9fym (Na: 2) - Lacto-N-Biosidase From Treponema Denticola Atcc 35405
Other atoms:
Zn (2);
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9fyt (Na: 2) - Mabs in Complex with Cobratoxin at pH 4.5
Other atoms:
Cl (4);
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9fz3 (Na: 3) - Crystal Structure of K38 Amylase From Bacillus Sp. Strain Ksm-K38 Covalently Bound to Alpha-1,6 Branched Pseudo-Trisaccharide Activity- Based Probe
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9g17 (Na: 1) - Structure of Pslg with A Covalently- Bound Pentasaccharide
Other atoms:
Cl (3);
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9g34 (Na: 2) - The Hiv Protease Inhibitor Darunavir Binding to the Active Site of Cryphonectria Parasitica Endothiapepsin
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9g4r (Na: 1) - Crystal Structure of the DUF2693-Fd Rna Motif
Other atoms:
Br (1);
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9gbf (Na: 2) - X-Ray Structure of PHDVC5HCH Tandem Domain of NSD2
Other atoms:
Zn (8);
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9gbt (Na: 1) - De Novo Designed Retro-Aldolase 13 (RAD13)
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9gcv (Na: 1) - Identification of Chloride Ions in Lysozyme at Long Wavelengths
Other atoms:
Cl (5);
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9gcz (Na: 1) - Xusb Lipoprotein Bound to Ferric Enterobactin
Other atoms:
Fe (2);
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9gf3 (Na: 4) - This Peptide Is A Variant of the De Novo Coiled-Coil Heptameric Peptic, Cc-Hept, Which Consists of 4 Heptad Repeats. This Peptide Is Denoted As Cc-Hept-HEN2 As Its Second Heptad Repeat Has Been Replaced with A Hendecad Repeat.
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9gf4 (Na: 2) - This Peptide Is A Variant of the Previously Designed De Novo Heptameric Coiled-Coil, Cc-Hept-IV, Which Consists of 4 Heptad Repeats. We Have Denoted This De Novo Peptide Cc-Hept-IV-HEN2 As It Includes A Noncanonical, Hendecad Repeat Which Replaces the Second Heptad Repeat in the Original Cc-Hept-IV Sequence.
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9gfl (Na: 1) - Crystal Structure of Aso Binding Fab Fragment
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9ggi (Na: 1) - Crystal Structure of Argininosuccinate Lyase From Arabidopsis Thaliana (Atasl)
Other atoms:
Cl (6);
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9ghk (Na: 1) - Crystal Structure of Fyn SH3 Domain/Tau 214-220 Peptide Complex
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9ghn (Na: 2) - Structure of Sars-Cov-2 Main Protease (Mpro) with Mutation of Q256A
Other atoms:
Cl (2);
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9ghx (Na: 1) - Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.
Other atoms:
Re (5);
Cl (4);
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9gi6 (Na: 2) - Structure of Sars-Cov-2 Main Protease (Mpro) with Mutation of N214A
Other atoms:
Cl (1);
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9gkk (Na: 3) - Betp Heterotrimeric Complex
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9gky (Na: 2) - Crystal Structure of Histone Deacetylase (Hdah) From Vibrio Cholerae in Complex with Decanoic Acid
Other atoms:
Zn (2);
K (9);
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9gla (Na: 2) - Crystal Structure of A CDK2-Based CDK7 Mimic with Inhibitor SY5609
Other atoms:
F (3);
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9glf (Na: 2) - Anthraquinone Pigment Production Regulated By Cinnamic Acid
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9gnw (Na: 1) - Universal Psii Assembly Intermediate
Other atoms:
Cl (2);
Mg (35);
Ca (1);
Mn (4);
Fe (2);
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9grq (Na: 2) - Sars-Cov-2 Methyltransferase NSP10-16 in Complex with Sam and Theophylline
Other atoms:
Zn (2);
-
9gtj (Na: 6) - Chlorite Dismutase From Pseudomonas Sp.
Other atoms:
Cl (1);
Fe (2);
-
9gu6 (Na: 8) - Ncs-1 Bound to Fda Ligand 3
Other atoms:
Ca (12);
F (6);
-
9gu8 (Na: 2) - Ncs-1 Bound to A Fda Ligand 4
Other atoms:
Ca (3);
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9gvd (Na: 3) - Structure of Phosphonate Monoester Hydrolase From Rhizobium Leguminosarum with Vanadate
Other atoms:
Mn (1);
V (1);
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9gve (Na: 3) - Structure of Phosphonate Monoester Hydrolase From Rhizobium Leguminosarum with Phenyl Phosphonate
Other atoms:
Mn (1);
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9gyb (Na: 1) - Crystal Structure of the Recombinant Codh From Rhodopspirillum Rubrum Produced in Escherichia Coli
Other atoms:
Ni (6);
Fe (60);
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9gyy (Na: 2) - Crystal Structure of Domain-of-Unknown-Function DUF4867 From Bacillus Megaterium
Other atoms:
Cl (1);
Fe (2);
-
9gzu (Na: 3) - Crystal Structure of Apo-Bacterioferritin (Bfr) From Brucella Melitentsis
Other atoms:
Cl (1);
Page generated: Mon Dec 15 11:18:54 2025
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