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Sodium in PDB 9f7t: Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer

Enzymatic activity of Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer

All present enzymatic activity of Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer:
3.4.19.12;

Protein crystallography data

The structure of Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer, PDB code: 9f7t was solved by A.Camara-Artigas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 2.05
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 140.637, 140.637, 141.434, 90, 90, 90
R / Rfree (%) 21 / 23.3

Other elements in 9f7t:

The structure of Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer (pdb code 9f7t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer, PDB code: 9f7t:

Sodium binding site 1 out of 1 in 9f7t

Go back to Sodium Binding Sites List in 9f7t
Sodium binding site 1 out of 1 in the Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars-Cov-2 Papain-Like Protease (Plpro) C112S-K191D-K229R Mutant: Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:55.2
occ:1.00
 O A:HOH537 2.2 50.2 1.0
O A:ILE124 2.4 49.6 1.0
O A:LEU121 2.4 48.7 1.0
HH A:TYR137 3.0 65.3 1.0
HA A:GLN122 3.4 68.1 1.0
H A:ILE124 3.5 59.4 1.0
C A:ILE124 3.6 51.7 1.0
OH A:TYR137 3.6 54.5 1.0
C A:LEU121 3.6 59.0 1.0
H A:LEU126 3.6 65.8 1.0
HA A:GLU125 3.8 68.0 1.0
CA A:GLN122 4.0 56.8 1.0
HE2 A:TYR137 4.1 67.4 1.0
N A:ILE124 4.1 49.5 1.0
C A:GLN122 4.1 55.1 1.0
N A:LEU126 4.2 54.9 1.0
N A:GLN122 4.3 49.3 1.0
HB3 A:LEU126 4.3 58.8 1.0
N A:GLN123 4.4 55.1 1.0
HG13 A:ILE124 4.4 57.6 1.0
H A:GLN123 4.4 66.1 1.0
O A:LEU126 4.5 53.3 1.0
N A:GLU125 4.5 56.4 1.0
CA A:ILE124 4.5 55.4 1.0
CA A:GLU125 4.5 56.7 1.0
O A:HOH575 4.5 56.8 1.0
O A:GLN122 4.5 47.5 1.0
CZ A:TYR137 4.5 53.1 1.0
HA A:LEU121 4.6 63.2 1.0
HB3 A:LEU121 4.6 61.3 1.0
CE2 A:TYR137 4.6 56.2 1.0
O A:HOH574 4.7 59.8 1.0
CA A:LEU121 4.7 52.7 1.0
HD3 A:ARG141 4.8 77.4 1.0
C A:GLU125 4.8 58.1 1.0
HG12 A:ILE124 4.9 57.6 1.0
C A:GLN123 5.0 51.5 1.0

Reference:

A.Camara-Artigas, A.Camara-Artigas. N/A N/A.
Page generated: Mon Aug 18 16:52:39 2025

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