Atomistry » Sodium » PDB 9ewd-9fdv » 9exm
Atomistry »
  Sodium »
    PDB 9ewd-9fdv »
      9exm »

Sodium in PDB 9exm: Cryogenic Apo Structures of Soluble Epoxide Hydrolase

Protein crystallography data

The structure of Cryogenic Apo Structures of Soluble Epoxide Hydrolase, PDB code: 9exm was solved by A.Dunge, H.Kack, G.Branden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.67 / 1.64
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.156, 93.156, 246.213, 90, 90, 120
R / Rfree (%) 19.5 / 22.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Cryogenic Apo Structures of Soluble Epoxide Hydrolase (pdb code 9exm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Cryogenic Apo Structures of Soluble Epoxide Hydrolase, PDB code: 9exm:

Sodium binding site 1 out of 1 in 9exm

Go back to Sodium Binding Sites List in 9exm
Sodium binding site 1 out of 1 in the Cryogenic Apo Structures of Soluble Epoxide Hydrolase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cryogenic Apo Structures of Soluble Epoxide Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na605

b:59.9
occ:1.00
OD2 A:ASP382 2.9 54.4 1.0
N A:GLU424 3.1 53.8 0.5
N A:GLU424 3.1 53.8 0.5
CA A:LYS421 3.3 61.4 1.0
C A:LYS421 3.4 59.6 1.0
CB A:GLU424 3.4 56.1 0.5
CB A:GLU424 3.4 56.1 0.5
CG A:ASP382 3.5 51.4 1.0
N A:CYS423 3.5 54.1 1.0
OD1 A:ASP382 3.6 52.8 1.0
N A:VAL422 3.7 57.7 1.0
CB A:CYS423 3.8 55.1 1.0
CA A:GLU424 3.9 54.0 0.5
CA A:GLU424 3.9 54.0 0.5
CA A:CYS423 3.9 54.2 1.0
O A:LYS421 3.9 59.7 1.0
C A:CYS423 4.0 54.0 1.0
N A:LYS421 4.1 63.0 1.0
CD A:LYS421 4.1 70.0 1.0
CB A:LYS421 4.3 63.3 1.0
C A:VAL422 4.3 55.1 1.0
CA A:VAL422 4.6 56.3 1.0
CB A:ASP382 4.7 44.8 1.0
O A:HOH1014 4.7 58.7 1.0
SG A:CYS423 4.7 58.0 1.0
CG A:LYS421 4.8 66.7 1.0

Reference:

A.Dunge, H.Kack, G.Branden. Cryogenic Apo Structures of Soluble Epoxide Hydrolase. To Be Published.
Page generated: Mon Aug 18 16:51:38 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy