Sodium in PDB 8p2t: Bovine Naive Ultralong Antibody ABD08* Collected at 100K

The structure of Bovine Naive Ultralong Antibody ABD08* Collected at 100K, PDB code: 8p2t was solved by J.D.Clarke, A.Douangamath, H.Mikolajek, D.I.Stuart, R.J.Owens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.74 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.03, 70.86, 96.01, 90, 90, 90
R / Rfree (%)	14.8 / 20.6

The binding sites of Sodium atom in the Bovine Naive Ultralong Antibody ABD08* Collected at 100K (pdb code 8p2t). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Bovine Naive Ultralong Antibody ABD08* Collected at 100K, PDB code: 8p2t:

Sodium binding site 1 out of 1 in the Bovine Naive Ultralong Antibody ABD08* Collected at 100K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bovine Naive Ultralong Antibody ABD08* Collected at 100K within 5.0Å range: probe atom residue distance (Å) B Occ H:Na401 b:41.9 occ:1.00 O H:HOH553 2.2 35.1 1.0 O H:HOH548 2.3 40.5 1.0 O H:HOH695 2.4 48.7 1.0 O H:LEU154 2.4 36.2 1.0 O H:GLY152 2.6 43.5 1.0 C H:GLY152 3.5 41.5 1.0 C H:LEU154 3.5 28.4 1.0 O H:SER140 3.7 47.1 1.0 O H:HOH796 4.0 51.0 1.0 N H:LEU154 4.0 32.6 1.0 O H:HOH702 4.1 55.0 1.0 O H:CYS151 4.1 36.0 1.0 O H:HOH566 4.2 41.7 1.0 CA H:GLY152 4.2 36.6 1.0 O H:ASP155 4.4 31.2 1.0 N H:ASP155 4.4 25.5 1.0 CA H:ASP155 4.4 30.1 1.0 CA H:LEU154 4.4 30.4 1.0 N H:THR153 4.4 41.2 1.0 C H:THR153 4.4 39.3 1.0 C H:ASP155 4.6 30.7 1.0 O H:GLY141 4.6 41.6 1.0 CA H:THR153 4.6 41.0 1.0 C H:SER140 4.7 41.5 1.0 O H:HOH713 4.7 58.1 1.0

J.D.Clarke, A.Douangamath, H.Mikolajek, M.B.D.Placido, D.I.Stuart, J.Hammond, R.J.Owens. The Impact of Chain-Exchange on Bovine Ultralong Immunoglobulins. Acta Crystallographica 2024SECTION F.