Sodium in PDB, part 288 (files: 11481-11520),
PDB 8oyw-8pkv
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11481-11520 (PDB 8oyw-8pkv).
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8oyw (Na: 1) - De Novo Designed Rhomboid Protease-Like Fold RPF_9
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8p0z (Na: 2) - AP01-S2.3 - A Variant of A Redesigned Transferrin Receptor Apical Domain
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8p1c (Na: 1) - Lysozyme Structure Solved From Serial Crystallography Data Collected at 1 Khz with Jungfrau Detector at Maxiv
Other atoms:
Cl (3);
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8p1d (Na: 1) - Lysozyme Structure Solved From Serial Crystallography Data Collected at 100 Hz with Jungfrau Detector at Maxiv
Other atoms:
Cl (2);
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8p2q (Na: 1) - Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-Oh
Other atoms:
Cl (5);
Tb (1);
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8p2t (Na: 1) - Bovine Naive Ultralong Antibody ABD08* Collected at 100K
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8p3d (Na: 4) - Full Length Structure of Tcmip with Bound Inhibitor NJS224.
Other atoms:
F (1);
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8p3m (Na: 2) - The Structure of Thiocyanate Dehydrogenase Mutant Form with Lys 281 Replaced By Ala From Thioalkalivibrio Paradoxus
Other atoms:
Cu (32);
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8p54 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 150 Micromolar Mg-132.
Other atoms:
Cl (1);
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8p55 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 75 Micromolar Mg-132.
Other atoms:
Cl (1);
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8p56 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 150 Micromolar X77.
Other atoms:
Cl (2);
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8p57 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 75 Micromolar X77.
Other atoms:
Cl (1);
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8p58 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 500 Micromolar X77 Enantiomer R.
Other atoms:
Cl (2);
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8p5a (Na: 1) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 5 Millimolar X77 Enantiomer R.
Other atoms:
Cl (2);
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8p5b (Na: 1) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 500 Micromolar X77 Enantiomer S.
Other atoms:
Cl (1);
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8p5c (Na: 1) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 5 Millimolar X77 Enantiomer S.
Other atoms:
Cl (1);
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8p5g (Na: 2) - Kinase Domain of Wild Type Human ULK1 in Complex with Compound CCT241533
Other atoms:
Mg (4);
F (2);
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8p5h (Na: 2) - Kinase Domain of Mutant Human ULK1 in Complex with Compound CCT241533
Other atoms:
F (2);
Mg (4);
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8p5i (Na: 3) - Kinase Domain of Mutant Human ULK1 in Complex with Compound Xmd-17-51
Other atoms:
Mg (8);
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8p5j (Na: 1) - Kinase Domain of Mutant Human ULK1 in Complex with Compound WZ4003
Other atoms:
Cl (2);
Mg (2);
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8p86 (Na: 2) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 5 Mm Mg-132, From An "Old" Crystal.
Other atoms:
Cl (1);
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8p87 (Na: 1) - Crystal Structure of the Main Protease (3CLPRO/Mpro) of Sars-Cov-2 Obtained in Presence of 5 Mm X77, From An "Old" Crystal.
Other atoms:
Cl (2);
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8p88 (Na: 1) - X-Ray Structure of Cardiotoxic Light Chain H3 in Complex to Neutralizing Nanobody C4
Other atoms:
Cl (1);
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8p8g (Na: 1) - Nitrogenase Mofe Protein From A. Vinelandii Beta Double Mutant D353G/D357G
Other atoms:
Cl (2);
Fe (46);
Mo (2);
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8p9y (Na: 3) - Sars-Cov-2 S Protein S:D614G Mutant in 3-Down with Binding Site of An Entry Inhibitor
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8pbg (Na: 1) - Mutant K1556T of the Dihydroorotase Domain of Human Cad Protein Bound to the Inhibitor Fluoroorotate
Other atoms:
Zn (2);
F (1);
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8pbh (Na: 1) - Mutant R1617Q of the Dihydroorotase Domain of Human Cad Protein Bound to the Substrate Carbamoyl Aspartate
Other atoms:
Zn (2);
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8pe9 (Na: 1) - Complex Between DDR1 Ds-Like Domain and Prth-101 Fab
Other atoms:
Ca (1);
Zn (3);
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8pej (Na: 35) - CJGH35 with A Galactosidase Activity-Based Probe
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8pft (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(D-P-Fphf)(CO3)3] in Condition A
Other atoms:
F (4);
Cl (1);
Ru (4);
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8pfu (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K3[RU2(CO3)4] in Condition A
Other atoms:
Ru (8);
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8pfw (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition A
Other atoms:
Ru (6);
Cl (1);
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8pfx (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(D-P-Fphf)(CO3)3] in Condition B
Other atoms:
Ru (6);
F (2);
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8pfy (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with K2[RU2(Danif)(CO3)3] in Condition B
Other atoms:
Ru (1);
Cl (1);
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8ph4 (Na: 2) - Co-Crystal Structure of the Sars-COV2 Main Protease NSP5 with An Uracil-Carrying X77-Like Inhibitor
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8ph7 (Na: 1) - X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with [RU2CL(Dphf)(O2CCH3)3] in Condition A
Other atoms:
Ru (4);
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8pha (Na: 4) - O(S)-Methyltransferase From Pleurotus Sapidus
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8piw (Na: 1) - Crystal Structure of Hen Egg White Lysozyme Co-Crystallized with 10 Mm TBXO4-NMET2
Other atoms:
Tb (1);
Cl (6);
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8pjd (Na: 2) - Crystal Structure of Mus Musculus Protein Arginine Methyltransferase 2 94-445
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8pkv (Na: 8) - Kelch Domain of KEAP1 in Complex with A Ortho-Dimethylbenzene Linked Cyclic Peptide 4 (Ortho-Wrcdeetgec)
Other atoms:
Cl (3);
Page generated: Sat Aug 23 06:32:18 2025
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