Sodium in PDB 8oud: Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469

The binding sites of Sodium atom in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 (pdb code 8oud). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 9 binding sites of Sodium where determined in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469, PDB code: 8oud:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Sodium binding site 1 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:23.3 occ:1.00 O A:HOH707 2.1 18.2 1.0 OD2 A:ASP475 2.2 24.6 1.0 O A:GLY382 2.3 24.4 1.0 O A:ASN471 2.4 21.2 1.0 O A:ASN386 2.5 21.2 1.0 CG A:ASP475 3.0 25.0 1.0 OD1 A:ASP475 3.0 24.4 1.0 C A:GLY382 3.2 13.1 1.0 C A:ASN471 3.3 20.4 1.0 CA A:ALA383 3.5 12.6 1.0 C A:ASN386 3.7 17.8 1.0 N A:ALA383 3.7 11.7 1.0 C A:ALA383 3.9 15.5 1.0 O A:ALA383 3.9 25.3 1.0 N A:VAL472 4.0 24.5 1.0 CA A:ASN471 4.1 17.0 1.0 CB A:ASN471 4.1 15.8 1.0 CA A:VAL472 4.1 15.6 1.0 CA A:GLY382 4.3 8.6 1.0 CB A:ASN386 4.4 11.5 1.0 CB A:ASP475 4.4 22.6 1.0 CA A:ASN386 4.4 11.1 1.0 O A:HOH717 4.4 23.7 1.0 N A:ASN386 4.5 16.3 1.0 OG A:SER353 4.7 32.1 1.0 CG A:MET387 4.7 18.7 1.0 N A:THR384 4.7 19.9 1.0 N A:MET387 4.7 19.2 1.0 CG1 A:VAL472 4.8 18.1 1.0 CB A:ALA383 4.8 11.3 1.0 ND2 A:ASN386 4.9 9.8 1.0 CA A:MET387 4.9 19.1 1.0

Sodium binding site 2 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:32.4 occ:1.00 O A:ALA428 2.3 41.1 1.0 O A:SER425 2.3 36.0 1.0 O A:THR384 2.5 25.5 1.0 O A:VAL426 2.5 36.5 1.0 C A:VAL426 3.0 35.5 1.0 N A:ALA428 3.1 38.2 1.0 C A:ALA428 3.2 39.6 1.0 SD A:MET387 3.3 41.8 1.0 C A:SER425 3.4 36.4 1.0 CA A:ALA428 3.5 37.9 1.0 CA A:VAL426 3.5 29.9 1.0 C A:THR384 3.7 19.6 1.0 C A:GLY427 3.8 40.1 1.0 N A:GLY427 3.8 38.3 1.0 CE A:MET387 3.8 25.2 1.0 CB A:ALA428 3.9 31.9 1.0 CG A:MET387 3.9 18.7 1.0 N A:VAL426 3.9 31.8 1.0 CA A:VAL385 4.2 20.7 1.0 CA A:GLY427 4.2 39.6 1.0 C A:VAL385 4.4 20.8 1.0 O A:VAL385 4.4 23.5 1.0 N A:VAL385 4.4 21.4 1.0 N A:ALA429 4.4 41.8 1.0 CA A:SER425 4.6 35.2 1.0 O A:GLY427 4.6 43.8 1.0 CB A:MET387 4.6 19.4 1.0 O A:SER424 4.7 41.7 1.0 CA A:THR384 4.8 17.1 1.0 CG2 A:THR384 5.0 21.9 1.0 CB A:VAL426 5.0 28.1 1.0 CA A:ALA429 5.0 44.8 1.0

Sodium binding site 3 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na603 b:17.8 occ:1.00 OD1 A:ASP388 1.9 22.0 1.0 OD1 A:ASN386 2.0 24.8 1.0 OG1 A:THR139 2.2 19.6 1.0 O A:PHE135 2.7 21.2 1.0 OG1 A:THR138 2.7 17.6 1.0 N A:THR139 3.0 13.3 1.0 CG A:ASP388 3.1 19.1 1.0 CG A:ASN386 3.2 10.8 1.0 CB A:THR139 3.3 13.6 1.0 CA A:THR139 3.4 10.7 1.0 OD2 A:ASP388 3.6 23.8 1.0 C A:THR138 3.6 14.3 1.0 C A:PHE135 3.6 16.1 1.0 CB A:THR138 3.7 16.0 1.0 O A:HOH710 3.8 23.6 1.0 ND2 A:ASN386 3.9 9.8 1.0 CA A:PHE135 3.9 15.6 1.0 O A:HOH706 3.9 11.6 1.0 CA A:THR138 4.2 12.2 1.0 N A:ASP388 4.3 18.3 1.0 N A:MET387 4.3 19.2 1.0 CB A:ASN386 4.3 11.5 1.0 CB A:ASP388 4.3 18.8 1.0 O A:THR138 4.4 21.1 1.0 CA A:ASN386 4.4 11.1 1.0 O A:HOH717 4.4 23.7 1.0 CA A:ASP388 4.5 16.3 1.0 CG2 A:THR139 4.5 14.2 1.0 C A:ASN386 4.5 17.8 1.0 CB A:PHE135 4.5 15.7 1.0 N A:THR138 4.6 22.3 1.0 C A:MET387 4.6 16.1 1.0 O A:PHE134 4.9 22.0 1.0 N A:LEU136 4.9 19.2 1.0 C A:THR139 4.9 17.2 1.0

Sodium binding site 4 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na601 b:18.6 occ:1.00 O B:HOH715 2.2 18.8 1.0 O B:ASN386 2.2 19.0 1.0 O B:ASN471 2.3 19.3 1.0 O B:GLY382 2.4 22.7 1.0 OD2 B:ASP475 2.5 23.7 1.0 OD1 B:ASP475 2.9 26.4 1.0 CG B:ASP475 3.0 26.3 1.0 C B:ASN471 3.2 19.1 1.0 C B:ASN386 3.4 17.6 1.0 C B:GLY382 3.4 14.8 1.0 CA B:ALA383 3.8 12.2 1.0 N B:ALA383 3.9 11.8 1.0 CA B:ASN471 3.9 16.5 1.0 CB B:ASN471 4.0 14.7 1.0 C B:ALA383 4.1 14.2 1.0 CB B:ASN386 4.1 9.4 1.0 O B:ALA383 4.1 24.3 1.0 N B:VAL472 4.1 19.8 1.0 CA B:ASN386 4.1 15.9 1.0 O B:HOH718 4.2 25.9 1.0 N B:ASN386 4.3 14.4 1.0 CA B:VAL472 4.3 15.9 1.0 N B:MET387 4.4 22.0 1.0 CA B:GLY382 4.5 6.8 1.0 CB B:ASP475 4.5 22.7 1.0 CA B:MET387 4.6 18.4 1.0 CG B:MET387 4.6 18.1 1.0 N B:THR384 4.8 21.7 1.0 OG B:SER353 4.9 32.1 1.0 CG B:ASN386 4.9 12.0 1.0 ND2 B:ASN386 5.0 14.3 1.0

Sodium binding site 5 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na602 b:31.9 occ:1.00 O B:SER425 2.1 36.2 1.0 O B:ALA428 2.5 44.3 1.0 O B:THR384 2.6 26.1 1.0 O B:VAL426 3.0 39.8 1.0 SD B:MET387 3.1 41.9 1.0 C B:ALA428 3.2 41.3 1.0 CG B:MET387 3.2 18.1 1.0 N B:ALA428 3.2 39.8 1.0 C B:SER425 3.3 36.5 1.0 C B:VAL426 3.3 38.9 1.0 CA B:ALA428 3.5 40.2 1.0 CB B:ALA428 3.6 34.6 1.0 CE B:MET387 3.6 24.0 1.0 CA B:VAL426 3.7 32.6 1.0 C B:THR384 3.8 21.1 1.0 N B:VAL426 4.0 33.3 1.0 C B:GLY427 4.0 41.4 1.0 N B:GLY427 4.1 39.0 1.0 CB B:MET387 4.1 18.3 1.0 N B:ALA429 4.3 42.7 1.0 CA B:VAL385 4.4 19.2 1.0 CA B:SER425 4.4 35.0 1.0 C B:VAL385 4.5 19.6 1.0 O B:VAL385 4.5 22.6 1.0 CA B:GLY427 4.5 39.5 1.0 N B:VAL385 4.5 20.6 1.0 O B:SER424 4.7 42.6 1.0 O B:GLY427 4.8 45.0 1.0 CA B:THR384 4.9 18.2 1.0 CA B:ALA429 4.9 44.6 1.0 OG B:SER425 5.0 32.8 1.0

Sodium binding site 6 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na603 b:18.9 occ:1.00 OD1 B:ASN386 1.8 25.8 1.0 OD1 B:ASP388 2.0 23.3 1.0 OG1 B:THR139 2.2 21.1 1.0 O B:PHE135 2.7 21.8 1.0 OG1 B:THR138 2.9 18.8 1.0 CG B:ASN386 3.0 12.0 1.0 N B:THR139 3.0 11.6 1.0 CG B:ASP388 3.1 18.8 1.0 CB B:THR139 3.3 15.5 1.0 CA B:THR139 3.4 12.2 1.0 OD2 B:ASP388 3.5 21.4 1.0 C B:PHE135 3.6 15.5 1.0 ND2 B:ASN386 3.7 14.3 1.0 C B:THR138 3.7 14.5 1.0 O B:HOH709 3.9 14.3 1.0 CB B:THR138 3.9 15.5 1.0 O B:HOH707 3.9 23.3 1.0 CA B:PHE135 3.9 13.0 1.0 CB B:ASN386 4.1 9.4 1.0 CA B:ASN386 4.2 15.9 1.0 N B:MET387 4.3 22.0 1.0 N B:ASP388 4.3 17.1 1.0 CA B:THR138 4.3 12.5 1.0 O B:HOH718 4.3 25.9 1.0 CB B:ASP388 4.4 16.8 1.0 C B:ASN386 4.4 17.6 1.0 O B:THR138 4.4 18.5 1.0 CG2 B:THR139 4.5 16.0 1.0 CB B:PHE135 4.5 14.4 1.0 CA B:ASP388 4.5 15.8 1.0 C B:MET387 4.6 18.8 1.0 N B:THR138 4.7 20.1 1.0 N B:LEU136 4.8 20.1 1.0 O B:PHE134 4.9 22.9 1.0 C B:THR139 4.9 18.4 1.0

Sodium binding site 7 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na601 b:23.7 occ:1.00 O C:ASN471 2.1 20.9 1.0 OD2 C:ASP475 2.2 25.6 1.0 O C:HOH709 2.2 19.3 1.0 O C:ASN386 2.5 24.7 1.0 O C:GLY382 2.7 23.4 1.0 CG C:ASP475 2.8 26.2 1.0 OD1 C:ASP475 2.9 24.4 1.0 C C:ASN471 2.9 17.9 1.0 C C:GLY382 3.6 15.2 1.0 C C:ASN386 3.7 21.1 1.0 CA C:ASN471 3.7 15.6 1.0 CB C:ASN471 3.7 14.1 1.0 N C:VAL472 3.8 22.0 1.0 CA C:ALA383 3.9 12.8 1.0 CA C:VAL472 4.0 17.5 1.0 O C:HOH715 4.0 19.1 1.0 N C:ALA383 4.1 11.4 1.0 CB C:ASP475 4.3 23.1 1.0 O C:ALA383 4.3 28.2 1.0 C C:ALA383 4.3 16.2 1.0 CB C:ASN386 4.4 10.5 1.0 CA C:ASN386 4.5 13.1 1.0 N C:MET387 4.7 20.0 1.0 N C:ASN386 4.7 16.9 1.0 CA C:GLY382 4.7 8.9 1.0 OG C:SER353 4.7 32.2 1.0 CG C:MET387 4.7 20.1 1.0 CG1 C:VAL472 4.8 14.3 1.0 CA C:MET387 4.8 16.9 1.0 CG C:ASN471 4.8 18.9 1.0 ND2 C:ASN386 4.8 10.0 1.0 N C:ASP475 4.9 22.8 1.0 C C:VAL472 4.9 18.6 1.0

Sodium binding site 8 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na602 b:31.1 occ:1.00 O C:SER425 2.3 32.1 1.0 O C:ALA428 2.4 42.8 1.0 O C:THR384 2.7 26.8 1.0 O C:VAL426 2.7 39.0 1.0 N C:ALA428 3.0 41.1 1.0 SD C:MET387 3.1 42.2 1.0 C C:VAL426 3.1 38.4 1.0 C C:ALA428 3.2 40.2 1.0 C C:SER425 3.3 35.5 1.0 CA C:ALA428 3.4 39.8 1.0 CA C:VAL426 3.7 32.1 1.0 C C:GLY427 3.7 40.8 1.0 CB C:ALA428 3.7 34.3 1.0 CG C:MET387 3.7 20.1 1.0 CE C:MET387 3.7 25.5 1.0 N C:GLY427 3.7 40.3 1.0 C C:THR384 3.9 21.6 1.0 N C:VAL426 4.0 34.1 1.0 O C:VAL385 4.1 20.6 1.0 CA C:GLY427 4.1 39.6 1.0 CB C:MET387 4.4 18.1 1.0 C C:VAL385 4.4 18.2 1.0 CA C:VAL385 4.4 19.3 1.0 CA C:SER425 4.5 36.3 1.0 N C:ALA429 4.5 42.0 1.0 O C:GLY427 4.5 44.4 1.0 O C:SER424 4.5 41.1 1.0 N C:VAL385 4.6 23.6 1.0

Sodium binding site 9 out of 9 in the Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Structure of the Human Neutral Amino Acid Transporter ASCT2 in Complex with Nanobody 469 within 5.0Å range: probe atom residue distance (Å) B Occ C:Na603 b:21.1 occ:1.00 OD1 C:ASP388 1.9 23.3 1.0 OD1 C:ASN386 2.0 28.8 1.0 OG1 C:THR139 2.2 18.9 1.0 O C:PHE135 2.7 22.8 1.0 OG1 C:THR138 2.8 16.5 1.0 N C:THR139 2.9 14.3 1.0 CG C:ASP388 3.0 19.7 1.0 CG C:ASN386 3.2 11.4 1.0 CB C:THR139 3.2 13.7 1.0 CA C:THR139 3.3 12.1 1.0 OD2 C:ASP388 3.5 22.6 1.0 C C:THR138 3.6 14.3 1.0 C C:PHE135 3.6 15.9 1.0 CB C:THR138 3.8 16.9 1.0 O C:HOH708 3.8 22.6 1.0 ND2 C:ASN386 3.8 10.0 1.0 CA C:PHE135 3.9 14.0 1.0 O C:HOH706 4.1 14.9 1.0 CA C:THR138 4.2 14.1 1.0 N C:MET387 4.3 20.0 1.0 N C:ASP388 4.3 18.5 1.0 CB C:ASN386 4.3 10.5 1.0 CB C:ASP388 4.3 17.5 1.0 O C:THR138 4.3 20.0 1.0 CA C:ASN386 4.3 13.1 1.0 CG2 C:THR139 4.4 18.0 1.0 CA C:ASP388 4.5 16.5 1.0 C C:ASN386 4.5 21.1 1.0 O C:HOH715 4.5 19.1 1.0 CB C:PHE135 4.5 14.0 1.0 N C:THR138 4.6 21.9 1.0 C C:MET387 4.6 20.1 1.0 N C:LEU136 4.8 19.8 1.0 C C:THR139 4.9 19.8 1.0 O C:PHE134 4.9 22.1 1.0

S.Khare, M.Villalba, J.Canul-Tec, A.Balsebre, A.Kumar, E.Pardon, J.Steyaert, C.Perez, N.Reyes. Receptor-Recognition and Antiviral Mechanisms of Human Placental Proteins. To Be Published.