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Sodium in PDB 8oep: Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide

Enzymatic activity of Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide

All present enzymatic activity of Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide, PDB code: 8oep was solved by M.Genera, B.Colcombet-Cazenave, A.Croitoru, B.Raynal, A.Mechaly, J.Caillet, A.Haouz, N.Wolff, C.Caillet-Saguy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.70 / 1.87
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.23, 82.23, 139.2, 90, 90, 120
R / Rfree (%) 19.8 / 24.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide (pdb code 8oep). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide, PDB code: 8oep:

Sodium binding site 1 out of 1 in 8oep

Go back to Sodium Binding Sites List in 8oep
Sodium binding site 1 out of 1 in the Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the PTPN3 Pdz Domain Bound to the HPV18 E6 Oncoprotein C-Terminal Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na101

b:84.6
occ:1.00
 O A:ILE67 2.8 28.0 1.0
O A:HIS70 3.3 28.6 1.0
O A:HOH241 3.6 48.7 1.0
O A:HOH260 3.6 52.7 1.0
CA A:GLY28 3.8 26.8 1.0
N A:VAL29 3.9 28.5 1.0
O A:SER68 3.9 31.0 1.0
C A:ILE67 3.9 29.7 1.0
C A:SER68 3.9 28.4 1.0
CA A:SER68 4.1 26.4 1.0
N A:HIS70 4.1 31.1 1.0
C A:GLY28 4.1 35.5 1.0
CG A:LEU35 4.2 33.5 1.0
CD1 A:ILE67 4.2 38.8 1.0
C A:HIS70 4.3 34.5 1.0
CD2 A:LEU35 4.5 27.6 1.0
N A:SER68 4.5 28.8 1.0
N A:GLY28 4.5 26.6 1.0
N A:GLU69 4.6 26.7 1.0
CA A:VAL29 4.7 31.7 1.0
CA A:HIS70 4.7 38.6 1.0
CB A:VAL29 4.8 48.6 1.0
CB A:ILE67 4.9 25.0 1.0
CG2 A:VAL75 4.9 25.6 1.0
N A:LEU35 4.9 25.5 1.0
C A:GLU69 5.0 37.5 1.0

Reference:

M.Genera, B.Colcombet-Cazenave, A.Croitoru, B.Raynal, A.Mechaly, J.Caillet, A.Haouz, N.Wolff, C.Caillet-Saguy. Interactions of the Protein Tyrosine Phosphatase PTPN3 with Viral and Cellular Partners Through Its Pdz Domain: Insights Into Structural Determinants and Phosphatase Activity Front Mol Biosci V. 10 2023.
ISSN: ESSN 2296-889X
Page generated: Mon Aug 18 14:52:19 2025

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