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Sodium in PDB 8ifu: Hcccr in Nacl

Sodium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Sodium atom in the Hcccr in Nacl (pdb code 8ifu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 48 binding sites of Sodium where determined in the Hcccr in Nacl, PDB code: 8ifu:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 48 in 8ifu

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Sodium binding site 1 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:30.0
occ:1.00
 OG A:SER73 2.5 30.0 1.0
O A:LYS233 2.8 7.1 1.0
NA A:NA303 3.0 30.0 1.0
C A:LYS233 3.6 7.1 1.0
O A:SER70 3.6 4.8 1.0
SG A:CYS74 3.6 30.0 1.0
CA A:LYS233 3.7 7.1 1.0
CB A:SER73 3.8 30.0 1.0
CG A:LYS233 3.8 30.0 1.0
CG1 A:ILE113 3.9 30.0 1.0
CA A:GLY237 3.9 8.1 1.0
N A:GLY237 4.0 8.1 1.0
CA A:SER70 4.2 4.8 1.0
CB A:LYS233 4.3 30.0 1.0
C A:SER70 4.3 4.8 1.0
N A:CYS74 4.4 1.8 1.0
O A:CYS232 4.6 6.8 1.0
CB A:SER70 4.7 30.0 1.0
CD2 A:PHE236 4.7 30.0 1.0
CD1 A:ILE113 4.7 30.0 1.0
N A:THR234 4.7 7.2 1.0
CB A:CYS74 4.8 30.0 1.0
C A:SER73 4.8 1.9 1.0
CA A:SER73 4.8 1.9 1.0
CB A:ILE113 4.9 30.0 1.0
N A:LYS233 4.9 7.1 1.0
CA A:CYS74 5.0 1.8 1.0
C A:PHE236 5.0 10.5 1.0
CG2 A:ILE113 5.0 30.0 1.0

Sodium binding site 2 out of 48 in 8ifu

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Sodium binding site 2 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:30.0
occ:1.00
 OD2 A:ASP116 2.3 30.0 1.0
CG A:ASP116 3.0 30.0 1.0
NA A:NA302 3.0 30.0 1.0
CB A:ASP116 3.3 30.0 1.0
CA A:SER70 3.3 4.8 1.0
CA A:ILE113 3.5 9.4 1.0
OG A:SER73 3.7 30.0 1.0
CB A:SER70 3.7 30.0 1.0
O A:ILE113 3.9 9.4 1.0
CD2 A:PHE236 4.0 30.0 1.0
N A:SER70 4.0 4.8 1.0
OD1 A:ASP116 4.0 30.0 1.0
CG1 A:ILE113 4.1 30.0 1.0
CB A:ILE113 4.1 30.0 1.0
O A:PHE69 4.1 3.7 1.0
CG2 A:ILE113 4.1 30.0 1.0
CE2 A:PHE236 4.1 30.0 1.0
C A:ILE113 4.2 9.4 1.0
O A:LEU112 4.2 10.8 1.0
C A:PHE69 4.3 3.7 1.0
C A:SER70 4.4 4.8 1.0
N A:ILE113 4.4 9.4 1.0
O A:SER70 4.5 4.8 1.0
CA A:GLY237 4.5 8.1 1.0
CB A:SER73 4.6 30.0 1.0
C A:LEU112 4.7 10.8 1.0
CA A:ASP116 4.8 13.6 1.0
N A:GLY237 4.9 8.1 1.0
OG A:SER70 4.9 30.0 1.0

Sodium binding site 3 out of 48 in 8ifu

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Sodium binding site 3 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:30.0
occ:1.00
 SG A:CYS192 3.6 30.0 1.0
CG1 A:VAL117 3.7 30.0 1.0
CA A:CYS192 4.0 31.0 1.0
CB A:PHE195 4.1 30.0 1.0
N A:CYS192 4.2 31.0 1.0
O A:ALA191 4.2 33.7 1.0
C A:ALA191 4.2 33.7 1.0
CG A:PHE195 4.3 30.0 1.0
CE2 A:PHE196 4.3 30.0 1.0
CE A:MET240 4.3 30.0 1.0
CG2 A:VAL117 4.4 30.0 1.0
CD1 A:LEU121 4.4 30.0 1.0
CB A:CYS192 4.4 30.0 1.0
CZ A:PHE236 4.4 30.0 1.0
CB A:ALA191 4.5 30.0 1.0
CD2 A:PHE195 4.5 30.0 1.0
CE1 A:PHE236 4.5 30.0 1.0
CD2 A:LEU188 4.5 30.0 1.0
CB A:VAL117 4.7 30.0 1.0
CG1 A:VAL173 4.8 30.0 1.0
CD2 A:PHE196 4.8 30.0 1.0
CD1 A:PHE195 4.9 30.0 1.0

Sodium binding site 4 out of 48 in 8ifu

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Sodium binding site 4 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na305

b:30.0
occ:1.00
 O A:HOH411 1.8 30.0 1.0
NH1 A:ARG244 3.0 30.0 1.0
O A:THR241 3.3 9.7 1.0
CD2 A:LEU245 3.4 30.0 1.0
CB A:ARG244 3.7 30.0 1.0
CG A:LEU245 3.7 30.0 1.0
OE2 A:GLU248 3.9 30.0 1.0
CG2 A:THR241 3.9 30.0 1.0
O A:HOH406 4.0 30.0 1.0
CZ A:ARG244 4.0 30.0 1.0
C A:THR241 4.1 9.7 1.0
CA A:THR241 4.1 9.7 1.0
N A:LEU245 4.1 22.6 1.0
CD A:ARG244 4.1 30.0 1.0
CB A:THR241 4.4 30.0 1.0
CD2 A:LEU47 4.4 30.0 1.0
C A:ARG244 4.4 14.4 1.0
NE A:ARG244 4.5 30.0 1.0
CG A:ARG244 4.5 30.0 1.0
OG1 A:THR241 4.6 30.0 1.0
CA A:ARG244 4.6 14.4 1.0
CA A:LEU245 4.7 22.6 1.0
CB A:LEU245 4.7 30.0 1.0
CD1 A:LEU245 4.8 30.0 1.0
CD A:GLU248 5.0 30.0 1.0

Sodium binding site 5 out of 48 in 8ifu

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Sodium binding site 5 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:30.0
occ:1.00
 O A:HOH409 1.5 30.0 1.0
OD1 A:ASP105 2.3 30.0 1.0
NA A:NA307 2.9 30.0 1.0
N A:TYR103 2.9 2.8 1.0
O A:HOH407 3.1 30.0 1.0
CG A:ASP105 3.3 30.0 1.0
NA A:NA308 3.4 30.0 1.0
CE3 A:TRP102 3.6 30.0 1.0
CA A:TRP102 3.6 4.0 1.0
C A:TRP102 3.8 4.0 1.0
OD2 A:ASP105 3.8 30.0 1.0
CA A:TYR103 3.8 2.8 1.0
O A:TYR101 4.1 2.6 1.0
CZ3 A:TRP102 4.2 30.0 1.0
CD2 A:TRP102 4.2 30.0 1.0
CB A:TRP102 4.4 30.0 1.0
CD1 A:TYR103 4.4 30.0 1.0
NZ A:LYS84 4.4 30.0 1.0
CB A:ASP105 4.4 30.0 1.0
N A:LEU104 4.4 3.2 1.0
CE2 A:TYR106 4.5 30.0 1.0
C A:TYR103 4.5 2.8 1.0
O A:PHE98 4.6 3.0 1.0
N A:ASP105 4.6 4.4 1.0
CG A:TRP102 4.6 30.0 1.0
N A:TRP102 4.7 4.0 1.0
CD2 A:TYR106 4.7 30.0 1.0
C A:TYR101 4.8 2.6 1.0
NA A:NA309 4.9 30.0 1.0
CZ A:TYR106 4.9 30.0 1.0
O A:TRP102 5.0 4.0 1.0
CE A:LYS84 5.0 30.0 1.0

Sodium binding site 6 out of 48 in 8ifu

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Sodium binding site 6 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na307

b:30.0
occ:1.00
 O A:HOH409 2.3 30.0 1.0
O A:TYR101 2.6 2.6 1.0
O A:PHE98 2.7 3.0 1.0
NA A:NA306 2.9 30.0 1.0
OD1 A:ASP105 3.2 30.0 1.0
NA A:NA308 3.4 30.0 1.0
C A:PHE98 3.5 3.0 1.0
C A:TYR101 3.6 2.6 1.0
N A:ASP105 3.6 4.4 1.0
CG A:ASP105 3.8 30.0 1.0
CB A:ASP105 3.9 30.0 1.0
N A:LEU104 3.9 3.2 1.0
NA A:NA313 3.9 30.0 1.0
N A:TYR103 4.0 2.8 1.0
CA A:TRP102 4.1 4.0 1.0
CB A:LEU104 4.2 30.0 1.0
CD1 A:PHE98 4.2 30.0 1.0
CA A:PHE98 4.2 3.0 1.0
N A:TRP102 4.3 4.0 1.0
N A:ASN99 4.3 3.4 1.0
C A:TRP102 4.4 4.0 1.0
CA A:ASP105 4.4 4.4 1.0
CA A:ASN99 4.4 3.4 1.0
CA A:LEU104 4.4 3.2 1.0
O A:ASN99 4.5 3.4 1.0
C A:LEU104 4.5 3.2 1.0
C A:ASN99 4.5 3.4 1.0
N A:TYR101 4.5 2.6 1.0
CA A:TYR101 4.6 2.6 1.0
OD2 A:ASP105 4.7 30.0 1.0
CE A:LYS84 4.7 30.0 1.0
C A:TYR103 4.8 2.8 1.0
CB A:PHE98 4.8 30.0 1.0
CA A:TYR103 4.9 2.8 1.0

Sodium binding site 7 out of 48 in 8ifu

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Sodium binding site 7 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na308

b:30.0
occ:1.00
 O A:HOH409 2.1 30.0 1.0
O A:ASN99 2.1 3.4 1.0
C A:ASN99 3.0 3.4 1.0
CD2 A:TRP102 3.2 30.0 1.0
CA A:ASN99 3.4 3.4 1.0
NA A:NA309 3.4 30.0 1.0
NA A:NA306 3.4 30.0 1.0
NA A:NA307 3.4 30.0 1.0
CG A:TRP102 3.4 30.0 1.0
CE2 A:TRP102 3.5 30.0 1.0
CA A:TRP102 3.6 4.0 1.0
CE3 A:TRP102 3.6 30.0 1.0
N A:TRP102 3.7 4.0 1.0
CD1 A:TRP102 3.8 30.0 1.0
NE1 A:TRP102 3.8 30.0 1.0
O A:HOH402 3.8 30.0 1.0
O A:TYR101 3.9 2.6 1.0
C A:TYR101 3.9 2.6 1.0
O A:PHE98 3.9 3.0 1.0
CB A:TRP102 4.1 30.0 1.0
NA A:NA310 4.1 30.0 1.0
N A:TRP100 4.1 2.4 1.0
CZ2 A:TRP102 4.1 30.0 1.0
CZ3 A:TRP102 4.2 30.0 1.0
C A:TRP100 4.2 2.4 1.0
N A:ASN99 4.3 3.4 1.0
N A:TYR101 4.4 2.6 1.0
CH2 A:TRP102 4.4 30.0 1.0
CB A:ASN99 4.4 30.0 1.0
O A:TRP100 4.4 2.4 1.0
C A:PHE98 4.5 3.0 1.0
CA A:TRP100 4.6 2.4 1.0
C A:TRP102 4.7 4.0 1.0
CA A:TYR101 4.7 2.6 1.0
N A:TYR103 4.9 2.8 1.0
OD1 A:ASN99 4.9 30.0 1.0

Sodium binding site 8 out of 48 in 8ifu

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Sodium binding site 8 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na309

b:30.0
occ:1.00
 NA A:NA310 2.8 30.0 1.0
OD1 A:ASN99 2.9 30.0 1.0
NA A:NA308 3.4 30.0 1.0
CG2 A:THR222 3.6 30.0 1.0
NA A:NA311 3.8 30.0 1.0
CG A:ASN99 3.8 30.0 1.0
O A:HOH409 3.8 30.0 1.0
CH2 A:TRP102 3.8 30.0 1.0
CA A:ASN99 3.8 3.4 1.0
CB A:ASN99 3.9 30.0 1.0
CZ2 A:TRP102 4.1 30.0 1.0
OG1 A:THR222 4.1 30.0 1.0
CZ A:PHE88 4.1 30.0 1.0
O A:ASN99 4.1 3.4 1.0
CZ3 A:TRP102 4.2 30.0 1.0
NZ A:LYS84 4.3 30.0 1.0
CB A:THR222 4.4 30.0 1.0
CE A:LYS84 4.4 30.0 1.0
C A:ASN99 4.5 3.4 1.0
O A:HOH402 4.5 30.0 1.0
O A:PHE98 4.6 3.0 1.0
CE2 A:TRP102 4.6 30.0 1.0
O A:HOH407 4.6 30.0 1.0
CE3 A:TRP102 4.7 30.0 1.0
CE2 A:PHE88 4.7 30.0 1.0
CD A:LYS84 4.8 30.0 1.0
NA A:NA306 4.9 30.0 1.0
CD2 A:TRP102 4.9 30.0 1.0
N A:ASN99 5.0 3.4 1.0
CA A:THR222 5.0 7.9 1.0
CE1 A:PHE88 5.0 30.0 1.0

Sodium binding site 9 out of 48 in 8ifu

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Sodium binding site 9 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na310

b:30.0
occ:1.00
 O A:HOH402 2.5 30.0 1.0
NA A:NA309 2.8 30.0 1.0
OG1 A:THR222 3.2 30.0 1.0
CZ2 A:TRP102 3.5 30.0 1.0
O A:ASN99 3.8 3.4 1.0
CB A:ASN99 3.8 30.0 1.0
CZ A:PHE88 3.9 30.0 1.0
CE2 A:TRP102 4.0 30.0 1.0
NA A:NA308 4.1 30.0 1.0
CE A:MET20 4.1 30.0 1.0
CH2 A:TRP102 4.1 30.0 1.0
CE1 A:PHE88 4.1 30.0 1.0
OD1 A:ASN99 4.1 30.0 1.0
CG2 A:THR222 4.2 30.0 1.0
CA A:ASN99 4.3 3.4 1.0
CB A:THR222 4.3 30.0 1.0
C A:ASN99 4.3 3.4 1.0
CG A:ASN99 4.3 30.0 1.0
NE1 A:TRP102 4.3 30.0 1.0
CG A:GLN218 4.4 30.0 1.0
CD A:GLN218 4.5 30.0 1.0
OE1 A:GLN218 4.6 30.0 1.0
O A:GLN218 4.9 12.2 1.0

Sodium binding site 10 out of 48 in 8ifu

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Sodium binding site 10 out of 48 in the Hcccr in Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Hcccr in Nacl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na311

b:30.0
occ:1.00
 O A:THR222 3.0 7.9 1.0
CG2 A:THR222 3.1 30.0 1.0
OH A:TYR81 3.4 30.0 1.0
O A:HOH407 3.7 30.0 1.0
C A:THR222 3.7 7.9 1.0
CA A:THR222 3.8 7.9 1.0
NA A:NA309 3.8 30.0 1.0
N A:ALA226 3.8 6.0 1.0
CB A:THR222 4.0 30.0 1.0
CB A:HIS225 4.0 30.0 1.0
NZ A:LYS84 4.1 30.0 1.0
CE1 A:TYR81 4.1 30.0 1.0
CZ A:TYR81 4.2 30.0 1.0
CB A:ALA226 4.2 30.0 1.0
CE A:MET28 4.2 30.0 1.0
CA A:ALA226 4.2 6.0 1.0
C A:HIS225 4.2 6.2 1.0
CA A:HIS225 4.6 6.2 1.0
CH2 A:TRP102 4.7 30.0 1.0
CZ3 A:TRP102 4.8 30.0 1.0
O A:HIS225 4.8 6.2 1.0
OG1 A:THR222 4.8 30.0 1.0
N A:ILE223 5.0 5.2 1.0

Reference:

M.F.Zhang, M.F.Zhang. N/A N/A.
Page generated: Mon Aug 18 14:37:14 2025

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