Sodium in PDB, part 285 (files: 11361-11400),
PDB 8icj-8j6g
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 11361-11400 (PDB 8icj-8j6g).
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8icj (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MGCL2
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8ick (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MGCL2 (5 Millimolar), and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and NICL2 (5 Millimolar)
Other atoms:
Ni (2);
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8icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Ammonium Sulfate (75 Millimolar)
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8icn (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Atp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
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8ico (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Azt-Tp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
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8icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (0.1 Millimolar) and MNCL2 (0.5 Millimolar)
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8icr (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8ics (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8ict (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Ddatp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
-
8icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
-
8icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
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8icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MNCL2
Other atoms:
Mn (1);
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8icz (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Lithium Sulfate (75 Millimolar)
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8ifu (Na: 48) - Hcccr in Nacl
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8ig1 (Na: 2) - Crystal Structure of Wild-Type Transthyretin in Complex with Rafoxanide
Other atoms:
Cl (4);
I (4);
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8ihx (Na: 1) - X-Ray Crystal Structure of N372D Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
Other atoms:
Mg (1);
Ca (1);
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8ihy (Na: 1) - X-Ray Crystal Structure of Q387E Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
Other atoms:
Ca (1);
Mg (1);
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8ijl (Na: 2) - Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp
Other atoms:
F (4);
Al (1);
Mg (1);
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8ijm (Na: 2) - Cyo-Em Structure of K794A Non-Gastric Proton Pump in Na+ Bound E1AMPPCP State
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8ijn (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
Other atoms:
Zn (2);
Mg (2);
Fe (4);
Cu (6);
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8ilu (Na: 1) - Crystal Structure of Mouse Galectin-3 in Complex with Small Molecule Inhibitor
Other atoms:
F (6);
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8ing (Na: 2) - Structure of the Ternary Complex of Lactoperoxidase with Substrate Nitric Oxide (No) and Product Nitrite Ion (NO2) at 1.98 A Resolution
Other atoms:
Ca (1);
I (13);
Fe (1);
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8iq8 (Na: 4) - Crystal Structure of 3,4-Dihydroxyphenylacetate 2,3-Dioxygenase (Dhpao) From Acinetobacter Baumannii
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8itz (Na: 1) - Crystal Structure of Human Galectin-3 in Complex with Small Molecule Inhibitor
Other atoms:
F (3);
Cl (3);
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8iu9 (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Glucose
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8iua (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltose
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8iub (Na: 3) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltotriose
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8ixu (Na: 1) - Rat Transcobalamin in Complex with Cobalamin
Other atoms:
Cl (4);
Co (1);
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8izj (Na: 2) - Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp
Other atoms:
Cl (4);
-
8izk (Na: 1) - Crystal Structure of Trypsin-Guanidine Complex at 2.05 Angstroms Resolution
Other atoms:
Cl (1);
Ca (1);
-
8j0i (Na: 2) - Aldo-Keto Reductase Kmakr
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8j0u (Na: 1) - Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.
Other atoms:
Cl (1);
Cd (9);
-
8j2h (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Single Mutation (N137A) in Jellyfish Cytaeis Uchidae From Biortus
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8j2l (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus
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8j5a (Na: 1) - Single-Particle Cryo-Em Structure of Mouse Apoferritin at 1.19 Angstrom Resolution (Dataset A)
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8j6g (Na: 1) - Neutron Structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Phenylethylamine at Pd 9.0
Other atoms:
Cu (1);
Page generated: Tue Feb 25 11:42:05 2025
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