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Sodium in PDB, part 285 (files: 11361-11400), PDB 8icj-8j6g

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11361-11400 (PDB 8icj-8j6g).
  1. 8icj (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MGCL2
  2. 8ick (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MGCL2 (5 Millimolar), and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  3. 8icl (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and NICL2 (5 Millimolar)
    Other atoms: Ni (2);
  4. 8icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Ammonium Sulfate (75 Millimolar)
  5. 8icn (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Atp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  6. 8ico (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Azt-Tp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  7. 8icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  8. 8icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (0.1 Millimolar) and MNCL2 (0.5 Millimolar)
  9. 8icr (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  10. 8ics (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  11. 8ict (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  12. 8icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Ddatp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  13. 8icv (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  14. 8icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (1);
  15. 8icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
    Other atoms: Mn (2);
  16. 8icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + Thymidine- 5'-Triphosphate, Soaked in the Presence of Dttp and MNCL2
    Other atoms: Mn (1);
  17. 8icz (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of of Datp (1 Millimolar), MNCL2 (5 Millimolar), and Lithium Sulfate (75 Millimolar)
  18. 8ifu (Na: 48) - Hcccr in Nacl
  19. 8ig1 (Na: 2) - Crystal Structure of Wild-Type Transthyretin in Complex with Rafoxanide
    Other atoms: Cl (4); I (4);
  20. 8ihx (Na: 1) - X-Ray Crystal Structure of N372D Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
    Other atoms: Mg (1); Ca (1);
  21. 8ihy (Na: 1) - X-Ray Crystal Structure of Q387E Mutant of Endo-1,4-Beta Glucanase From Eisenia Fetida
    Other atoms: Ca (1); Mg (1);
  22. 8ijl (Na: 2) - Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp
    Other atoms: F (4); Al (1); Mg (1);
  23. 8ijm (Na: 2) - Cyo-Em Structure of K794A Non-Gastric Proton Pump in Na+ Bound E1AMPPCP State
  24. 8ijn (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
    Other atoms: Zn (2); Mg (2); Fe (4); Cu (6);
  25. 8ilu (Na: 1) - Crystal Structure of Mouse Galectin-3 in Complex with Small Molecule Inhibitor
    Other atoms: F (6);
  26. 8ing (Na: 2) - Structure of the Ternary Complex of Lactoperoxidase with Substrate Nitric Oxide (No) and Product Nitrite Ion (NO2) at 1.98 A Resolution
    Other atoms: Ca (1); I (13); Fe (1);
  27. 8iq8 (Na: 4) - Crystal Structure of 3,4-Dihydroxyphenylacetate 2,3-Dioxygenase (Dhpao) From Acinetobacter Baumannii
  28. 8itz (Na: 1) - Crystal Structure of Human Galectin-3 in Complex with Small Molecule Inhibitor
    Other atoms: F (3); Cl (3);
  29. 8iu9 (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Glucose
  30. 8iua (Na: 1) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltose
  31. 8iub (Na: 3) - Crystal Structure of GH66 Endodextranase From Flavobacterium Johnsoniae in Complex with Isomaltotriose
  32. 8ixu (Na: 1) - Rat Transcobalamin in Complex with Cobalamin
    Other atoms: Cl (4); Co (1);
  33. 8izj (Na: 2) - Crystal Structure of Escherichia Coli Adenine Phosphoribosyltransferase (Aprt) in Complex with Amp
    Other atoms: Cl (4);
  34. 8izk (Na: 1) - Crystal Structure of Trypsin-Guanidine Complex at 2.05 Angstroms Resolution
    Other atoms: Cl (1); Ca (1);
  35. 8j0i (Na: 2) - Aldo-Keto Reductase Kmakr
  36. 8j0u (Na: 1) - Crystal Structure of Horse Spleen L-Ferritin A115T Mutant at -180DEG Celsius.
    Other atoms: Cl (1); Cd (9);
  37. 8j2h (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Single Mutation (N137A) in Jellyfish Cytaeis Uchidae From Biortus
  38. 8j2l (Na: 2) - Crystal Structure of A Bright Green Fluorescent Protein (Staygold) with Double Mutations (N137A, Y187F) in Jellyfish Cytaeis Uchidae From Biortus
  39. 8j5a (Na: 1) - Single-Particle Cryo-Em Structure of Mouse Apoferritin at 1.19 Angstrom Resolution (Dataset A)
  40. 8j6g (Na: 1) - Neutron Structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Phenylethylamine at Pd 9.0
    Other atoms: Cu (1);
Page generated: Tue Feb 25 11:42:05 2025

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