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Sodium in PDB 8bol: X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18

Enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18

All present enzymatic activity of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18:
3.4.17.21;

Protein crystallography data

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18, PDB code: 8bol was solved by L.Motlova, C.Barinka, M.Benesova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 1.55
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 101.686, 130.248, 159.501, 90, 90, 90
R / Rfree (%) 19.2 / 21.4

Other elements in 8bol:

The structure of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18 also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18 (pdb code 8bol). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18, PDB code: 8bol:

Sodium binding site 1 out of 1 in 8bol

Go back to Sodium Binding Sites List in 8bol
Sodium binding site 1 out of 1 in the X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na807

b:54.4
occ:1.00
 OH A:TYR242 2.3 33.2 1.0
O A:HOH1159 2.3 35.1 1.0
OE1 A:GLU560 2.9 27.8 1.0
OG1 A:THR558 3.0 27.4 1.0
CZ A:TYR242 3.2 29.4 1.0
CE2 A:TYR242 3.4 28.6 1.0
CE1 A:TYR151 3.6 28.8 1.0
CB A:GLU560 3.6 26.1 1.0
CB A:THR558 3.6 24.0 1.0
CG2 A:THR558 3.7 22.3 1.0
CD A:GLU560 3.8 26.0 1.0
CG A:GLU560 3.9 25.6 1.0
CB A:PRO148 4.1 29.4 1.0
O A:HOH1294 4.2 26.2 0.5
CD1 A:TYR151 4.2 30.7 1.0
CZ A:TYR151 4.4 30.3 1.0
OH A:TYR151 4.4 29.9 1.0
CE1 A:TYR242 4.5 26.6 1.0
CG A:PRO148 4.5 28.8 1.0
CA A:GLU560 4.6 25.1 1.0
N A:GLU560 4.6 22.8 1.0
O A:PRO149 4.8 28.9 1.0
CD2 A:TYR242 4.8 27.3 1.0
N A:LEU561 4.9 24.7 1.0
OE2 A:GLU560 4.9 27.0 1.0

Reference:

L.Motlova, C.Barinka, M.Benesova. X-Ray Structure of Human Glutamate Carboxypeptidase II (Gcpii) in Complex with An Inhibitor P18 To Be Published.
Page generated: Mon Aug 18 13:21:09 2025

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