Sodium in PDB, part 223 (files: 8881-8920),
PDB 6tp0-6u7o
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 8881-8920 (PDB 6tp0-6u7o).
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6tp0 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Maltose
Other atoms:
Ca (2);
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6tp1 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Maltotetraose
Other atoms:
Ca (2);
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6tp2 (Na: 2) - Crystal Structure of Bacillus Paralicheniformis Alpha-Amylase in Complex with Beta-Cyclodextrin
Other atoms:
Ca (2);
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6tq4 (Na: 1) - Crystal Structure of the Orexin-1 Receptor in Complex with Compound 16
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6tqb (Na: 2) - X-Ray Structure of Roquin Roq Domain in Complex with A UCP3 CDE1 Sl Rna Motif
Other atoms:
Mg (1);
Cl (4);
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6tqd (Na: 2) - D00-D0 Domain of Intimin
Other atoms:
Br (9);
Cl (6);
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6tqp (Na: 1) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
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6tqq (Na: 1) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
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6tr1 (Na: 5) - Native Cytochrome C6 From Thermosynechococcus Elongatus in Space Group H3
Other atoms:
Fe (3);
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6trr (Na: 2) - Structural Insight Into Tanapoxvirus Mediated Inhibition of Apoptosis
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6trw (Na: 3) - Crystal Structure of DPP8 in Complex with the Eil Peptide (Slrflfegqriadnh)
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6trx (Na: 3) - Crystal Structure of DPP8 in Complex with 1G244
Other atoms:
F (6);
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6ts4 (Na: 1) - Coagulation Factor XI Protease Domain in Complex with Active Site Inhibitor
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6ttk (Na: 4) - Crystal Structure of the Kelch Domain of Human KLHL12 in Complex with DVL1 Peptide
Other atoms:
Cl (1);
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6ttn (Na: 1) - N-Terminally Truncated Hyoscyamine 6-Hydroxylase (TH6H) in Complex with N-Oxalylglycine and Hyoscyamine
Other atoms:
Ni (1);
Sr (1);
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6tto (Na: 1) - N-Terminally Truncated Hyoscyamine 6-Hydroxylase (TH6H) in Complex with 2-Oxoglutarate
Other atoms:
Ni (1);
Sr (2);
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6tv7 (Na: 5) - Crystal Structure of Rsgcamp in the Off State (Illuminated)
Other atoms:
Ca (4);
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6tvg (Na: 1) - Human CD73 (Ecto 5'-Nucleotidase) in Complex with Ampcp in the Open State
Other atoms:
Zn (2);
Ca (1);
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6tvl (Na: 1) - Hen Egg White Lysozyme in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound
Other atoms:
F (3);
Ru (1);
Cl (1);
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6tvp (Na: 2) - Structure of Mycobacterium Smegmatis Alpha-Maltose-1-Phosphate Synthase Glgm
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6tvy (Na: 1) - Structure of Hen Egg White Lysozyme Crystallized in the Presence of Tb-XO4 Crystallophore in the Xtalcontroller Device
Other atoms:
Tb (3);
Cl (2);
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6tww (Na: 1) - Variant W229D/F290W-19 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4)
Other atoms:
Mg (1);
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6tx2 (Na: 1) - Human HPF1
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6tx4 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 2-Pyridone
Other atoms:
Cl (1);
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6tx5 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 4-Methylimidazole
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6tx6 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Nicotinamide
Other atoms:
Cl (1);
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6tx7 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with 2-Piperidone
Other atoms:
Cl (1);
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6tx8 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Imidazole
Other atoms:
Cl (1);
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6tx9 (Na: 2) - Crystal Structure of Human FKBP51 FK1 Domain A19T Mutant in Complex with Hydantoin
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6txb (Na: 4) - Crystal Structure of MINDY1 Mutant (P138A) in Complex with LYS48 Linked Di-Ubiquitin
Other atoms:
Cl (2);
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6txd (Na: 1) - Variant W229D/F290W-12 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4)
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6txg (Na: 1) - Proteinase K in Complex with A "Half Sandwich"-Type Ru(II) Coordination Compound
Other atoms:
F (3);
Ru (2);
Ca (1);
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6ty6 (Na: 1) - Variant W229D/F290W-2 of the Last Common Ancestor of Gram-Negative Bacteria Beta-Lactamase Class A (GNCA4) Bound to 5(6)- Nitrobenzotriazole (Ts-Analog)
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6u2o (Na: 2) - Structure of Human Dna Polymerase Beta Misinserting Dampnpp Opposite the 5'G of the Cisplatin Pt-Gg Intrastrand Crosslink
Other atoms:
Mg (1);
Pt (1);
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6u3a (Na: 2) - 1.65 Angstrom Crystal Structure of the N97S Ca-Cam:CAV1.2 Iq Domain Complex
Other atoms:
Ca (7);
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6u66 (Na: 1) - Structure of the Trimeric Globular Domain of Adiponectin
Other atoms:
Ca (3);
-
6u6b (Na: 2) - Structure of Human Dna Polymerase Beta Misinserting Dampnpp Opposite the 5'G of the Cisplatin Pt-Gg Intrastrand Crosslink with Manganese in the Active Site
Other atoms:
Mn (2);
Pt (1);
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6u6c (Na: 1) - Crystal Structure of Tryptophan Synthase From M. Tuberculosis - Aminoacrylate- and GSK2-Bound Form
Other atoms:
F (4);
K (8);
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6u6u (Na: 1) - IL36R Extracellular Domain in Complex with BI655130 Fab
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6u7o (Na: 1) - Hiv-1 Wild Type Protease with Grl-00819A, with Phenyl-Boronic-Acid As P2'-Ligand and with A 6-5-5-Ring Fused Crown-Like Tetrahydropyranofuran As the P2-Ligand
Other atoms:
Cl (4);
Page generated: Mon Dec 15 11:15:39 2025
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